Pairwise Alignments

Query, 598 a.a., Long chain acyl-CoA dehydrogenase [fadN-fadA-fadE operon] (EC 1.3.8.8) from Variovorax sp. SCN45

Subject, 554 a.a., acyl-CoA dehydrogenase from Magnetospirillum magneticum AMB-1

 Score =  335 bits (858), Expect = 4e-96
 Identities = 219/543 (40%), Positives = 292/543 (53%), Gaps = 42/543 (7%)

Query: 1   MPTYNPPVRDMQFVLHEVLNVTEELKALPAHAETDADTINAVIEEAGKFAAEVTFPLNIS 60
           M  Y  P+ D+ F L            LP     D +T   V+  A     EV  PL+  
Sbjct: 1   MIDYRTPLPDLLFALRHGAGAAR----LP---HWDDETAETVLTHAAAMVDEVIAPLDPV 53

Query: 61  GDEEGCTLDKATHEVKTPKGFKDAYAKYVEGGWPALSCDPAFGGQGLPFVVNQCLFEMLN 120
           GD EG  L      V  P+ F DAY ++   GW  L+     GGQGLP ++   L EML+
Sbjct: 54  GDIEGTKL--VDGRVVMPQPFVDAYRQFAGDGWQGLAVPEEDGGQGLPHILASALSEMLS 111

Query: 121 SANQAWTMYPGLSHGAYEALAAHGTEEQKKTYLPKLTSGEWTGTMCLTEPHCGTDLGLLR 180
            A   + M   L+HGA   LAA G+E Q+  ++P+L +GE   TMCLTE   G+DLGL+R
Sbjct: 112 GACITYQMVLSLAHGAMRTLAASGSEAQRAAWIPRLAAGEVLATMCLTEAQAGSDLGLVR 171

Query: 181 TKAEPQADGTYRITGSKIFISAGEHDMT-DNIIHLVLARLPDAPKGSKGISLFVVPKFKV 239
           T A PQADG++ I+G KIFIS G+ ++T   I+HLVLAR PDAP G KG+SLF+ P    
Sbjct: 172 TMASPQADGSWSISGGKIFISGGDQNLTGGQIMHLVLARTPDAPAGVKGLSLFLCPSH-- 229

Query: 240 KADGSLGERNPIFCAGLEHKMGIHGNATAQIVIEGATGTLVGEPNKGLAAMFVMMNAARL 299
             DGS   RN I    LE KMG+H + T Q+  +GA   ++G P +GLA MF MMNA RL
Sbjct: 230 LEDGS---RNAISVVRLEEKMGMHASPTCQVAFDGARAEIIGAPGEGLARMFTMMNAERL 286

Query: 300 GVGNQSLGLTEVAYQNALAYAKDRIQMRSLSGVKAKDKEADPIIVHPDVRKMLLTAKAYA 359
            V  Q +GL EVA Q +LAYA +R Q R+      KD   D I  H DVR+MLL   A A
Sbjct: 287 DVAVQGVGLAEVALQRSLAYANERKQGRA-----GKDGGPDFIAKHGDVRRMLLAQMALA 341

Query: 360 EGGRALQIFCTLLLDKEHNHPDEKVRKDSGELVALLTPIVKAFITDNGHISTNACMQVFG 419
            G RA+ +    L+D E          D   L+ L+TP+ KAF T+    + +  +QV G
Sbjct: 342 MGCRAMVM--RTLVDLELG--------DRPALMELMTPVAKAFATEAAMEAADHAIQVHG 391

Query: 420 GHGFIKEWGMEQFVRDNRINMIYEGTNTIQSLDLLGRKVLGNNGASLKKFGKLVGKLVEE 479
           G+GF++E+ +EQ +RD RI  IYEGTN IQ+  + GR +  +NG +L +F         +
Sbjct: 392 GYGFLREYRVEQILRDGRITRIYEGTNGIQAATVAGRVIRLDNGRALTEF---------K 442

Query: 480 EGVNEKMAEFINPIAG-LGDQLTKFTTEIGFKGFQNPDEVGAAAVDYLRVAGHFVFGYLF 538
             V E M       AG LG  L  +  +          ++G  A  YLR+ G   FG  +
Sbjct: 443 AEVEESMGLASPAFAGALGRALAAW--DEASAAMLGRRDIGLTATSYLRLTGLLAFGAAW 500

Query: 539 ARM 541
           AR+
Sbjct: 501 ARL 503