Pairwise Alignments

Query, 391 a.a., ABC transporter, substrate-binding protein (cluster 4, leucine/isoleucine/valine/benzoate) from Variovorax sp. SCN45

Subject, 400 a.a., Branched-chain amino acid ABC transporter, periplasmic amino acid-binding protein from Pseudomonas putida KT2440

 Score = 50.4 bits (119), Expect = 9e-11
 Identities = 89/385 (23%), Positives = 151/385 (39%), Gaps = 27/385 (7%)

Query: 1   VRRRTL---GLLAGALVAAPA---LVFARVRPLRIGVIGSWSGPYAGGGRQFDAGMAVWL 54
           ++RRTL   GL  GAL + P      FA  +PL    + S SG +A  G+  D G  + +
Sbjct: 1   MQRRTLLKAGLALGALGSLPLGAHRAFAD-QPLTFYGLKSMSGAFASYGKYADMGSRLAI 59

Query: 55  AAHNHHIAGRPVELLRRDVPGSAPDQARRHAQDLVESEKVDLLSGLDFSSNAYAVGAVAA 114
           A H   + G P++    D  G+A  +A R  Q+ +  +      G   SS+A AV     
Sbjct: 60  AEH-PQLLGHPLKYKVIDTEGNA-GKAVRKVQEAIGQDGARFFQGCTLSSSALAVSKEIH 117

Query: 115 QARMPLIVMNAASSGITARC-----PFAVRVSFTIAQVTLPLARWALQQGLRDVCTVVAD 169
           +A    +    A       C      ++V     I +  +P++R  L Q  R   T+   
Sbjct: 118 KAGGVFMTPVGADEITGKDCNASTFRWSVPTYGAIRETLVPMSR-QLPQAKR-WYTITPQ 175

Query: 170 YASGVDA--ESAFVSGITAGGGRVGAMLRVPLATLDYSAYMLRLRELKPQAVFFFLPSGQ 227
           Y  G DA  ++A       G   +G      L   ++S Y+      KP  V   L  G 
Sbjct: 176 YVFG-DALLDNARKVFAELGVEHIGNSYH-SLQEQEFSGYLTNAIAAKPD-VLVLLNFGS 232

Query: 228 MPAGFLKFWRDRGMADTGIRLLSTGDATDDNYLQGIGELADGLVTSHHYSFAHESTANRR 287
             +  L+   + G+ D  +++L    A  D + +   ++ +G+     Y    ++  N+ 
Sbjct: 233 QASNALRQAVNFGIKDR-MKVLMVWSAGLDQFQELGSDVLEGVYLGAQYWHQVDTPLNKL 291

Query: 288 FTGVFETEYGSHLRPGYFAVAAHDALAAIDAAMSSPAARGNAGGERLVDAFRGLKLDSPR 347
                   YG  + P Y   A +         + +    G+  G  +  A +G++   P 
Sbjct: 292 LVAATRKAYG--INPNYPLAADY---IGTKVMLEAIVKAGSLDGAAVSAALQGMRFQGPT 346

Query: 348 GPLEIDAHTRDVVQTVYIRRVERQG 372
           G   I      V++  Y+ R + QG
Sbjct: 347 GEELIRPGDHQVLKDYYLLRGKPQG 371