Pairwise Alignments

Query, 180 a.a., RNA polymerase ECF-type sigma factor from Variovorax sp. SCN45

Subject, 179 a.a., hypothetical protein from Sphingobium sp. HT1-2

 Score = 58.9 bits (141), Expect = 5e-14
 Identities = 45/149 (30%), Positives = 72/149 (48%), Gaps = 5/149 (3%)

Query: 17  GDPAAIAGLLAVCQADARRYARRHCQASD--IDDAVQESLMVIVRKVRGLKAAAAFSSWL 74
           GD AA A LL +     R + RR  + +D  I+D VQ++L+ +  +        AF++WL
Sbjct: 18  GDAAAHAALLRLLVPLLRGFYRRRVRGADDDIEDMVQDTLIAVHTRRATYDPERAFTAWL 77

Query: 75  FTVIKRECLRLQRAMFRHDPLDDEVAERQLAS--RTDDALRLDLTHALESLPAHYLEVVL 132
           + V + + +   R + R  P+DD +A+  +A         RLD+   LE LP     ++ 
Sbjct: 78  YAVARYKMIDHFRRVGRLRPIDD-LADSLVADEFEASSIARLDINDLLEQLPPKQARMIR 136

Query: 133 LRDFEELTIAEIAQRLGEPAGAVKSRLHR 161
               E L++AE A   G     VK  +HR
Sbjct: 137 AIRLEGLSVAEAASAEGIGESDVKVSVHR 165