Pairwise Alignments

Query, 180 a.a., RNA polymerase ECF-type sigma factor from Variovorax sp. SCN45

Subject, 173 a.a., putative ECF sigma factor PrtI from Pseudomonas putida KT2440

 Score = 50.4 bits (119), Expect = 2e-11
 Identities = 47/137 (34%), Positives = 65/137 (47%), Gaps = 13/137 (9%)

Query: 47  DDAVQESLMVIVRKVRGLKAAAAFSSWLFTVIKRECLRLQR---------AMFRHDPLDD 97
           DD VQ ++   + +    + A A  +WLFT++ R+ L  +R         + F  +  DD
Sbjct: 31  DDLVQATVERALSRRDQQRDADALRAWLFTILYRQFLDGKRRERLHARWLSWFGRNEHDD 90

Query: 98  EVAERQLASRTDDALRLDLTHALESLPAHYLEVVLLRDFEELTIAEIAQRLGEPAGAVKS 157
           E     L   T    + DL  A   L A    ++LL   E L+  E AQ LG P G V S
Sbjct: 91  EPVGDNL--ETIVLAQADL-QAFARLTAEQRALLLLVSIEGLSYKEAAQALGIPIGTVMS 147

Query: 158 RLHRARMLVREYLLEGD 174
           RL RAR  +RE L EG+
Sbjct: 148 RLSRARNALRE-LTEGN 163