Pairwise Alignments

Query, 180 a.a., RNA polymerase ECF-type sigma factor from Variovorax sp. SCN45

Subject, 191 a.a., RNA polymerase, sigma 24 (sigma E) factor (NCBI) from Escherichia coli BW25113

 Score = 55.5 bits (132), Expect = 6e-13
 Identities = 43/170 (25%), Positives = 71/170 (41%), Gaps = 17/170 (10%)

Query: 10  LICAAQTGDPAAIAGLLAVCQADARRYARRHCQASDIDDAVQESLMVIVRKVRGLKAAAA 69
           L+   Q GD  A   L+   Q        R+  + D+ D VQE+ +   R +   +  +A
Sbjct: 10  LVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSGDVPDVVQEAFIKAYRALDSFRGDSA 69

Query: 70  FSSWLFTVIKRECLRLQRAMFRHDPLDD----------------EVAERQLASRTDDALR 113
           F +WL+ +          A  R  P  D                E++  +    +++ LR
Sbjct: 70  FYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENLMLSEE-LR 128

Query: 114 LDLTHALESLPAHYLEVVLLRDFEELTIAEIAQRLGEPAGAVKSRLHRAR 163
             +   +ESLP      + LR+ + L+  EIA  +  P G V+SR+ RAR
Sbjct: 129 QIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAR 178