Pairwise Alignments

Query, 180 a.a., RNA polymerase ECF-type sigma factor from Variovorax sp. SCN45

Subject, 168 a.a., ECF family sigma factor from Agrobacterium fabrum C58

 Score = 53.5 bits (127), Expect = 2e-12
 Identities = 45/140 (32%), Positives = 63/140 (45%), Gaps = 5/140 (3%)

Query: 29  CQADARRYARRHCQASDI-DDAVQESLMVIVRKVRGLKAAAAFSSWLFTV---IKRECLR 84
           C    RRYA       D  DD VQ+ L   +RK    +       WL+ V   + R  LR
Sbjct: 11  CIPALRRYANALTHDRDTADDLVQDCLERAIRKKALWRPQGPLRPWLYRVLVNVYRNNLR 70

Query: 85  LQRAMFRHDPLDDEVAERQL-ASRTDDALRLDLTHALESLPAHYLEVVLLRDFEELTIAE 143
             +   +  P+DD   +  + A++T      ++  A+E L   + E +LL   E LT AE
Sbjct: 71  GSKRRPQQIPIDDVTEQLVVPAAQTGRVALAEMARAIEKLSGEHRETLLLVVVEGLTYAE 130

Query: 144 IAQRLGEPAGAVKSRLHRAR 163
            A  L  P G + SRL RAR
Sbjct: 131 AANILEIPLGTLMSRLGRAR 150