Pairwise Alignments

Query, 400 a.a., Uncharacterized MFS-type transporter YtbD from Variovorax sp. SCN45

Subject, 395 a.a., putative inner membrane transport protein from Pseudomonas putida KT2440

 Score =  285 bits (729), Expect = 2e-81
 Identities = 158/384 (41%), Positives = 233/384 (60%), Gaps = 8/384 (2%)

Query: 5   LLALTLSAFAIGTTEFVIVGLIPTVAADLHIGLPSAGLLVSLYALGVAIGAPVLTALTGK 64
           L AL + AF IGTTEF  +GL+P +A  + + +PSAG+L++ YA+GV +GAP++T L  +
Sbjct: 12  LFALAIGAFGIGTTEFTPMGLLPVIAQGVEVSIPSAGMLITAYAIGVMVGAPIMTLLFSR 71

Query: 65  LPRKALLLSLMALFTVGNLLAWQAPSYESLIAARVLTGLAHGVFFSIGSTIATGLVPKEK 124
             ++A L++LMA+FT+GNLL+  +P Y +L+A+R++T L HG FF +G+ +A  +VPKEK
Sbjct: 72  FGKRAALMALMAIFTLGNLLSSLSPDYYTLLASRLVTSLNHGAFFGLGAVVAASVVPKEK 131

Query: 125 AASAIAIMFTGLTVALVTGVPLGTFIGQHFGWRETFLAVSALGVVAFIGSWVFVPSNIRH 184
            ASA+A MF GLT+A + GVP  T+IGQ  GWR  F   + LG++A    W  +P   R 
Sbjct: 132 QASAVATMFMGLTIANIGGVPAATWIGQQIGWRMAFAGTAVLGLLAMAALWYALPKGERG 191

Query: 185 TPPASLAQQAKVLAEPRLLLVYAKTAIGYGGSFIPFTFLAPILTEVSGFSAGAVGWVMLV 244
           + P  + ++  V+A P +LL  A T +G G  F  +T++AP+L E++G S G V   +++
Sbjct: 192 SVP-HVRKELAVIARPSVLLAMATTVLGAGAMFTLYTYVAPVLAELTGASDGFVTLGLVL 250

Query: 245 YGVSVAVGNIWGGKLADRRGPIPALKIIFALLAAVLLLFNFAAPHKWLALLAVLMWGAVA 304
            GV   +GN  GG+LAD      A KI  A+LA ++L           A +A+L+WG   
Sbjct: 251 IGVGFTLGNSLGGRLAD-WSLDGAAKIFLAVLALIMLAMPLVLGSHIGAAIALLVWGMFT 309

Query: 305 FGNVPGLQVYVVKQAERFTPQAVDVASGLNIAAFNLGIA-GAAWAGGLIVTHLGLMHTPW 363
           F  VP LQ+ V+  A     +A  +AS +N+ AFNLG A GAA  G +I  +LG    P 
Sbjct: 310 FAVVPPLQMRVMTAA----IEAPGLASSINVGAFNLGNAVGAALGGAVISLNLGYAAVPM 365

Query: 364 IGALVVLVSLALTQWSGSLDRRAG 387
            G ++    L L  W G   + AG
Sbjct: 366 AGGVLAAAGLLLV-WLGGRHKVAG 388



 Score = 38.1 bits (87), Expect = 4e-07
 Identities = 46/179 (25%), Positives = 70/179 (39%), Gaps = 6/179 (3%)

Query: 194 AKVLAEPRLLLVYAKTAIGYGGSFIPFTFLAPILTEVSGFSAGAVGWVMLVYGVSVAVGN 253
           A+ +   R+L   A  A G G +      L P++ +    S  + G ++  Y + V VG 
Sbjct: 3   AQTMRPGRVLFALAIGAFGIGTTEFTPMGLLPVIAQGVEVSIPSAGMLITAYAIGVMVGA 62

Query: 254 IWGGKLADRRGPIPALKIIFALLAAVLLLFNFAAPHKWLALLAVLMWGAVAFGNVPGLQV 313
                L  R G   AL  + A+     LL + +    +  LLA  +  ++  G   GL  
Sbjct: 63  PIMTLLFSRFGKRAALMALMAIFTLGNLLSSLSP--DYYTLLASRLVTSLNHGAFFGLGA 120

Query: 314 YVVKQAERFTPQAVDVAS---GLNIAAFNLGIAGAAWAGGLIVTHLGLMHTPWIGALVV 369
            V         QA  VA+   GL IA    G+  A W G  I   +    T  +G L +
Sbjct: 121 VVAASVVPKEKQASAVATMFMGLTIANIG-GVPAATWIGQQIGWRMAFAGTAVLGLLAM 178