Pairwise Alignments

Query, 190 a.a., RNA polymerase sigma factor from Variovorax sp. SCN45

Subject, 193 a.a., RNA polymerase sigma E factor from Pseudomonas putida KT2440

 Score = 62.8 bits (151), Expect = 4e-15
 Identities = 50/175 (28%), Positives = 82/175 (46%), Gaps = 10/175 (5%)

Query: 21  RGDRQALQQLYQRESRYLMGVALRIVRQRQQAEDVLHDAFISIWQRAETFNPARGEGR-- 78
           RGDR+A   L  +    ++G+ +R V    +A+DV  +AFI  ++    F   RG+    
Sbjct: 16  RGDRRAFDLLVLKYQHKILGLIVRFVHDTHEAQDVAQEAFIKAYRALGNF---RGDSAFY 72

Query: 79  GWIYSVVRNAALNMVRSGARQ---VDVSEDAAEAIDDQAALAAYASAADPFELRADL-GR 134
            W+Y +  N A N + S  R+    DVS + AE  D    L    S      LR ++ G 
Sbjct: 73  TWLYRIAINTAKNYLVSRGRRPPDSDVSSEDAEFYDGDHGLKDLESPERSL-LRDEIEGT 131

Query: 135 LEGCLGGLEPARRDCILYAYVEGCSHGEIAERLQTPLGTVKAWIQRGMRALRECM 189
           +   +  L    R  +     +G S+ +IA  +Q P+GTV++ I R   A+ + +
Sbjct: 132 VHRTIQQLPEDLRTALTLREFDGLSYEDIASVMQCPVGTVRSRIFRAREAIDKAL 186