Pairwise Alignments

Query, 190 a.a., RNA polymerase sigma factor from Variovorax sp. SCN45

Subject, 161 a.a., ECF subfamily RNA polymerase sigma-24 factor from Pseudomonas putida KT2440

 Score = 55.8 bits (133), Expect = 4e-13
 Identities = 45/153 (29%), Positives = 71/153 (46%), Gaps = 14/153 (9%)

Query: 38  LMGVALRIVRQRQQAEDVLHDAFISIWQRAETFNPARGEGRGWIYSVVRNAALNMVRSGA 97
           L+G   R +R RQQAED+ HDAF+ +    ET      + R +++   RN A++  R   
Sbjct: 14  LIGTWTRKLRSRQQAEDLTHDAFVRV---LETPREQVEQPRAYLHQAARNIAVDGFR--- 67

Query: 98  RQVDVSEDAAEAIDDQAALAAYASAADPFELRADL---GRLEGCLGGLEPARRDCILYAY 154
                 ED  +A++ +A       + DP      L     +E  L  L    R   ++  
Sbjct: 68  -----REDRRQALEREAFEEGATGSGDPEAYVHALELADSVERALAELPLNCRQVFIWQK 122

Query: 155 VEGCSHGEIAERLQTPLGTVKAWIQRGMRALRE 187
           +EG +  EIAER+      V+ ++ R +R LRE
Sbjct: 123 LEGLTQAEIAERMGLSKNMVEKYMIRTLRHLRE 155