Pairwise Alignments

Query, 294 a.a., Diaminopimelate epimerase (EC 5.1.1.7) from Variovorax sp. SCN45

Subject, 299 a.a., diaminopimelate epimerase from Agrobacterium fabrum C58

 Score =  154 bits (388), Expect = 3e-42
 Identities = 98/289 (33%), Positives = 143/289 (49%), Gaps = 15/289 (5%)

Query: 3   IRFTKMQGAGNDFVVLDETRGTLGLSAAQYRFLADRHFGVGADQILTVRPSPAEGVDFQY 62
           + F KM G  N  +V+D  RG   +         + +     DQI+ +      G D   
Sbjct: 5   VEFAKMNGLANKILVVD-MRGRKDMVTPAAAIALNSNPATQFDQIMAIHDPRVGGTDAFI 63

Query: 63  VIHNADGGEVEQCGNGARCFMRFVSEHKLTDKTEVRVQTLAGVIAPRMGADGRVTVDMGA 122
            I N DG + + CGNG RC ++ +S    T KT    QT+AG++      DG ++VDMG 
Sbjct: 64  DILNCDGTKAQACGNGTRCVVQALSSE--TGKTSFTFQTVAGILNAVEHEDGMISVDMGL 121

Query: 123 PVFETERVPFDTAGLDPQPEGAWQKWHLALGTRAGSAIVSVAVLSMGNPHAVQVVDNVD- 181
           P F    +P      D        +  L +G      + S AV+SMGNPHA+  VD    
Sbjct: 122 PRFRWSDIPLSEEFHDTS------RIELQIGPIDAPILHSPAVMSMGNPHAIFWVDRDPM 175

Query: 182 TAPVAEQGPQIEHHPRFPQRVNAGFMQVVDRTHIKLRVFERGAGETLACGTGACAAVVAG 241
           T  +   GP +E+HP FP++ N    QV+  + ++ R +ERGAG TLACG+ ACA+ V+ 
Sbjct: 176 TFDLERFGPLLENHPMFPEKANITLAQVISDSALRTRTWERGAGLTLACGSAACASAVSA 235

Query: 242 IRLGLLERRVDVQTHGG----VLTIEWQGEGQPVLMTGPATTVFEGDIE 286
            R G   R+V +          LTI+W+ E   V+MTGPA   + G ++
Sbjct: 236 ARTGRTGRKVTIDVASSPVRVPLTIDWR-EDNHVVMTGPAEWEWSGSVD 283