Pairwise Alignments

Query, 404 a.a., 23S rRNA (cytosine(1962)-C(5))-methyltransferase (EC 2.1.1.191) from Variovorax sp. SCN45

Subject, 401 a.a., class I SAM-dependent rRNA methyltransferase from Magnetospirillum magneticum AMB-1

 Score =  197 bits (502), Expect = 3e-55
 Identities = 148/402 (36%), Positives = 192/402 (47%), Gaps = 26/402 (6%)

Query: 4   LRLKPGKERSMQRRHPWVFESAIARGGADS----GETVRVESHDGAFLAWAAFSPASKIR 59
           +RL  G+ + ++  HPWVF + I  G        G  V +       L  A F+P S I 
Sbjct: 15  IRLAKGRSKRLRAGHPWVFSNEIEMGAEAKALPPGSLVTLMDAGDERLGVATFNPHSLIA 74

Query: 60  ARAWSFVETQRIDAAFLASVCARAVAARGLFDLQSDGVRVVHGEADGLPGLIVDRYGDTL 119
           AR  S      +D  FLA     A+A R      +   R+VH EAD LPGLIVDRYGD L
Sbjct: 75  ARVLSRRAADTVDVDFLAERLRAALALRDTL-FPTPHYRLVHSEADRLPGLIVDRYGDVL 133

Query: 120 VAQFLSAGVERWKDVLADALLKATGLAKLYERSDASGREREGLKPVTGWLRG--DGPTEI 177
             Q  +AG+ER   VL DAL        +   +D+  R+ EGL+P      G  DGP E 
Sbjct: 134 AVQTNTAGMERLLPVLLDALQMVLAPRAVVLVNDSPVRKLEGLEPHHDVAFGQVDGPVE- 192

Query: 178 VIREHGWKLSLDIATGHKTGFYLDQRDSRQRFAELAQHRRFRRVLNCFCYTGGFTV-AAL 236
            + E+G +   D+  G KTG++ DQRD+R   A LA   + RRVL+ + Y GGF V AA 
Sbjct: 193 -LEENGCRFVADLTGGQKTGWFFDQRDNRAFVARLA---KGRRVLDLYTYAGGFAVQAAK 248

Query: 237 AGLKAANALQGAQLVSVDSSLPALERARGHLALNGFEGQGIEAEFLDANVNTVLREFIDQ 296
           AG          Q ++VD S  +L  A     LNG E Q + AE         L      
Sbjct: 249 AG--------ATQTIAVDRSEHSLALADQAARLNGVEVQTVRAEAFAEMERLAL-----A 295

Query: 297 GRTFDAIVLDPPKFAPTAAHAERAARAYKDINRLALKLLEPGGVLLTFSCSGGISADLFH 356
           G  F  +V DPP F  +       A+ Y+ + RLA  L+EPGG LL  SCS  +  + F 
Sbjct: 296 GERFGLVVADPPAFVKSRKDLGAGAKGYRKMARLAAALVEPGGFLLCASCSHHMPVETFA 355

Query: 357 KIVASAGIDAGVDGYIAERLGAAPDHPMTIEFPEGEYLKGLV 398
           + +      AG  G I    GAA DHP+    PE  YLK  V
Sbjct: 356 EEIGHGLHLAGRSGRILRSAGAASDHPVHPWLPESAYLKAQV 397