Pairwise Alignments

Query, 307 a.a., 16S rRNA (cytosine(1402)-N(4))-methyltransferase (EC 2.1.1.199) from Variovorax sp. SCN45

Subject, 308 a.a., rRNA small subunit methyltransferase H from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  421 bits (1083), Expect = e-123
 Identities = 220/308 (71%), Positives = 249/308 (80%), Gaps = 5/308 (1%)

Query: 1   VTTPWTHTTVLLNEAVEALLSGSTAATGTYVDATFGRGGHARAILSRLAPEGRLIAFDKD 60
           V + W H TVLLNEAV+AL        G YVDATFGRGGH+R IL +L+ +GRL  FDKD
Sbjct: 2   VQSAWNHQTVLLNEAVQAL---DINPDGHYVDATFGRGGHSRLILEQLSRKGRLTVFDKD 58

Query: 61  AEAVAEAARI--SDARFSIRHQGFRSLGELPDASIDGLLMDLGVSSPQIDNPVRGFSFRF 118
            +AV  A  +  SD RFSIRH+GF  LGEL  AS DGLLMDLGVSSPQID+P RGFSFR 
Sbjct: 59  PQAVQAAKELAASDGRFSIRHEGFCHLGELGAASADGLLMDLGVSSPQIDDPERGFSFRH 118

Query: 119 DGPLDMRMDTTRGESVAEWLATAELQQIAEVIRDYGEERFAVQIAKAIVARRQERGPIST 178
           DGPLDMRMDTTRG+SVA+WL TAE+  ++EVIRDYGEERFA  IAKAI  RRQERGP  T
Sbjct: 119 DGPLDMRMDTTRGQSVAQWLETAEVSTLSEVIRDYGEERFAQSIAKAIDRRRQERGPFRT 178

Query: 179 TTELAELVAGTVKTREQGQNPATRTFQAFRIFINAELEELQQALEASLSVLKPGGRLAVI 238
           T+ELAE+VAG VKTRE G++PATRTFQAFRIFINAELEELQQALEASL VL+PGG+L VI
Sbjct: 179 TSELAEVVAGAVKTREPGKDPATRTFQAFRIFINAELEELQQALEASLQVLRPGGKLVVI 238

Query: 239 SFHSLEDRIVKQFIAKHSKEVYDRRAPFAAPKVMKLNALERIKPSQAEVSGNPRSRSAIL 298
           SFHSLEDR+VKQF+A+HS+ V DRR PFA P  M L  L+R+ PS  EV GNPRSRSA++
Sbjct: 239 SFHSLEDRMVKQFMARHSRAVVDRRVPFAEPAPMALTGLKRVMPSDEEVKGNPRSRSAVM 298

Query: 299 RVAERTEA 306
           RVAERTEA
Sbjct: 299 RVAERTEA 306