Pairwise Alignments

Query, 518 a.a., UDP-N-acetylmuramoyl-dipeptide--2,6-diaminopimela te ligase (EC 6.3.2.13) from Variovorax sp. SCN45

Subject, 455 a.a., D-alanyl-D-alanine-adding enzyme from Pseudomonas putida KT2440

 Score = 95.5 bits (236), Expect = 4e-24
 Identities = 101/371 (27%), Positives = 153/371 (41%), Gaps = 63/371 (16%)

Query: 26  DSRAVGAGDIFVAWPGAATDGRKHVASALAQGAAVCLVEHEGVEPFGFDGDERIVSYPGL 85
           DSR+V AG +FVA  G   DG  ++A   A+GA   LVE E  +          V  P L
Sbjct: 31  DSRSVSAGQLFVALAGPRFDGHDYLADVKAKGAVAALVEREVAD----------VDLPQL 80

Query: 86  KAAT--------GPIASAFYDNPSALLDVLAVTGTNGKTSTAWWLAESLSTLRAAGGVRV 137
           + A         G +  A +D P     V+A+TG++GKT+    LA   S LR  G V  
Sbjct: 81  QVADCRLALGQLGALNRAAFDKP-----VVAITGSSGKTTVKEMLA---SILRTRGLVHA 132

Query: 138 MKPDGTMQRDAPSPCAVMGTLGVGVPPELTYTGLTTPDPVMMQRELRSLVERGFGACAIE 197
            +  G +  D  +P  ++      + PE +                 +++E G       
Sbjct: 133 TR--GNLNNDLGAPLTLLE-----IAPEHS----------------AAVIELG------- 162

Query: 198 ASSIGIAERRLDGAQIAVAVFTNFTQDHLDYHGSMDAYWQAKAELFRWPGLRA-AVINID 256
           AS IG     +   Q  V +  N    H+   G  D   +AK E+    G    A++N+D
Sbjct: 163 ASRIGEIRYTVGLTQPQVVIINNAGTAHVGEFGGPDKIVEAKGEILEGLGQGGIAILNLD 222

Query: 257 DTHGASLCANLIDAGIGALDVWTVSAGGKPARLVARDIGYDAQGLQFSVAEHGTAAVERL 316
           D        ++  A  GA  V + +     A   A DIG DA+G   S   HG      +
Sbjct: 223 DK-----AFDIWKARAGAHKVVSFARSNPKADFHASDIGRDARGCP-SFTLHGAGETVAV 276

Query: 317 STGLIGQYNVANLLGVLGTLRALGLTLAQAAAACANLTSVPGRMDRAGTGDGAPLAVVDY 376
              ++G++NV+N L       A+GL+L+  AA  A +  V GR       +G  +    Y
Sbjct: 277 QLNVLGEHNVSNALAAAAAAHAVGLSLSGIAAGLAAVQPVKGRTVAQIAPNGVRVIDDSY 336

Query: 377 AHTPDALDKAL 387
              P ++  A+
Sbjct: 337 NANPTSMCAAI 347