Pairwise Alignments

Query, 518 a.a., UDP-N-acetylmuramoyl-dipeptide--2,6-diaminopimela te ligase (EC 6.3.2.13) from Variovorax sp. SCN45

Subject, 496 a.a., UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase from Pseudomonas putida KT2440

 Score =  358 bits (919), Expect = e-103
 Identities = 220/494 (44%), Positives = 287/494 (58%), Gaps = 35/494 (7%)

Query: 26  DSRAVGAGDIFVAWPGAATDGRKHVASALAQGAAVCLVEHEGVEPFGFDGDERIVSYPGL 85
           DSR+V  GD+F+A PGA  DGR+H+A ALA+GAA    E +G        D  ++   GL
Sbjct: 25  DSRSVRPGDLFLAVPGAKVDGREHIADALARGAAAVAYEEQGANVLPLT-DVPLIPVKGL 83

Query: 86  KAATGPIASAFYDNPSALLDVLAVTGTNGKTSTAWWLAESLSTLRAAGGVRVMKPDGTMQ 145
            A    IA  FY  PS  L+++ VTGTNGKTS    +A++L  L    G R         
Sbjct: 84  IAQLSDIAGRFYGEPSRQLNLVGVTGTNGKTSVTQLVAQALDLL----GQR--------- 130

Query: 146 RDAPSPCAVMGTLGVGVPPELTYTGLTTPDPVMMQRELRSLVERGFGACAIEASSIGIAE 205
                 C ++GTLG G   EL    LTTPDP+ +Q  L  L + G  A A+E SS  + +
Sbjct: 131 ------CGLIGTLGTGFYGELQSGRLTTPDPIAVQSTLNDLKKGGARAVAMEVSSHALEQ 184

Query: 206 RRLDGAQIAVAVFTNFTQDHLDYHGSMDAYWQAKAELFRWPGLRAAVINIDDTHGASLCA 265
            R+   +  +AV TN ++DHLDYHGSM+AY  AKA+LF WP LR  V+N+DD  G  L A
Sbjct: 185 GRVAALEFDIAVMTNLSRDHLDYHGSMEAYEAAKAKLFAWPSLRCQVVNLDDDFGRRLAA 244

Query: 266 NLIDAGIGALD-----VWTVSAGGKPARLVARDIGYDAQGLQFSVAEHGTAAVER-LSTG 319
           +   A   ++D     + + S     A L  R+  +   G++ ++    TA  ER L + 
Sbjct: 245 DF--ARRPSVDHIETRLLSYSLESPEASLFCREAVFSDDGVRATLV---TAQGERILRSQ 299

Query: 320 LIGQYNVANLLGVLGTLRALGLTLAQAAAACANLTSVPGRMDRAGTGDGAPLAVVDYAHT 379
           L+G++N++N+L  + TL AL   L +       L    GRM R G GD  PL VVDYAHT
Sbjct: 300 LLGRFNLSNMLAAVATLLALDYALDEILKVTPQLQGPVGRMQRLGGGD-KPLVVVDYAHT 358

Query: 380 PDALDKALIGLRPLAQQRGGALWCLFGCGGDRDPIKRPMMAAVAERQADRVIVTSDNPRS 439
           PDAL+K L  LRP A    G L CLFGCGGDRD  KRP+MA VAER ADRV+VT DNPR+
Sbjct: 359 PDALEKVLEALRPHAH---GKLLCLFGCGGDRDRGKRPLMAEVAERLADRVLVTDDNPRT 415

Query: 440 EKPDAIISQVLLGFSRPEVAQVQPDRALAIADAIAQAAPQDVVLIAGKGHEAWQEIAGQR 499
           E P  I   +  GF+RP+  +    R  AIA  IA AA  DV+++AGKGHE +QEI G+R
Sbjct: 416 EDPSRIFDDIRPGFTRPDDVEFVAGRGEAIAHLIATAAANDVIVLAGKGHEDYQEINGER 475

Query: 500 IEFSDKTHALQALA 513
            +FSD T A +ALA
Sbjct: 476 HDFSDLTEAEKALA 489