Pairwise Alignments

Query, 518 a.a., UDP-N-acetylmuramoyl-dipeptide--2,6-diaminopimela te ligase (EC 6.3.2.13) from Variovorax sp. SCN45

Subject, 478 a.a., UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase from Magnetospirillum magneticum AMB-1

 Score =  253 bits (645), Expect = 1e-71
 Identities = 194/500 (38%), Positives = 252/500 (50%), Gaps = 48/500 (9%)

Query: 25  ADSRAVGAGDIFVAWPGAATDGRKHVASALAQGAAVCLVEHEGVEPFGFDGDERIVSYPG 84
           ADSRAV  G +F A PG   DGR  + +ALA GA V ++  EG  P     +  +V+   
Sbjct: 17  ADSRAVRPGYLFAALPGTKADGRAFIPAALAAGA-VAVLAPEGSRP-DLPPEVVLVTDAN 74

Query: 85  LKAATGPIASAFYDNPSALLDVLAVTGTNGKTSTAWWLAESLSTLRAAGGVRVMKPDGTM 144
            +     +ASAF+     ++   AVTGTNGKTSTA +  + ++ L  A            
Sbjct: 75  PRRRFALMASAFHGAQPRVMT--AVTGTNGKTSTAEFFRQIMARLGHAA----------- 121

Query: 145 QRDAPSPCAVMGTLGVGVPPELTYTGLTTPDPVMMQRELRSLVERGFGACAIEASSIGIA 204
                   A +GTLG+  P      GLTTPDP  +  +L  L E G     +EASS G+ 
Sbjct: 122 --------AAIGTLGITAPGWDNQGGLTTPDPAGLHADLARLAEMGVTHACMEASSHGLD 173

Query: 205 ERRLDGAQIAVAVFTNFTQDHLDYHGSMDAYWQAKAELFR--WPGLRAAVINIDD---TH 259
           + RLDG ++  A FTN T+DHLDYH  M+AY +AK  LF    P    AVIN D      
Sbjct: 174 QHRLDGVRLMAAAFTNLTRDHLDYHADMNAYAEAKLRLFAEVLPEGATAVINADSDLAPR 233

Query: 260 GASLCANLIDAGIGALDVWTVSAGGKPAR-LVARDIGYDAQGLQFSVAEHGTAAVERLST 318
              LCA     GI      TV   G+ AR L   +    A G +  +   G A   RL  
Sbjct: 234 AVELCAK---RGI------TVLGFGRTARDLRLIEARPTAAGQELDLEIMGRAVTIRLP- 283

Query: 319 GLIGQYNVANLLGVLGTLRALGLTLAQAAAACANLTSVPGRMDR-AGTGDGAPLAVVDYA 377
            L G++   N L  LG   A G     A  A  +L  VPGR+ + A   +GAP+  VDYA
Sbjct: 284 -LAGRFQADNALAALGLALACGADPVAALEALGHLDGVPGRLQQVASRANGAPI-YVDYA 341

Query: 378 HTPDALDKALIGLRPLAQQRGGALWCLFGCGGDRDPIKRPMMAAVAERQADRVIVTSDNP 437
           HTPDAL+  L  LRP A +R   L  +FGCGGDRD  KRP+M A+  R AD +IVT DNP
Sbjct: 342 HTPDALETVLKALRPHAARR---LVAVFGCGGDRDAGKRPLMGAIGCRLADAMIVTDDNP 398

Query: 438 RSEKPDAIISQVLLGFSRPEVAQVQPDRALAIADAIAQAAPQDVVLIAGKGHEAWQEIAG 497
           RSE P AI  +  +  + P   ++  DR  AI  A++     DV++IAGKGHE  Q +  
Sbjct: 399 RSEDPAAI--RAAVRGACPAGIEI-ADRRGAIRAAVSGLQKGDVLVIAGKGHEQGQIVGA 455

Query: 498 QRIEFSDKTHALQALAKRGG 517
             + F D   A  A+    G
Sbjct: 456 SVLPFDDAAEARDAVRLADG 475