Pairwise Alignments

Query, 482 a.a., UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alani ne ligase (EC 6.3.2.10) from Variovorax sp. SCN45

Subject, 456 a.a., UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase from Pseudomonas simiae WCS417

 Score =  261 bits (667), Expect = 4e-74
 Identities = 172/444 (38%), Positives = 245/444 (55%), Gaps = 26/444 (5%)

Query: 34  VHTDTRTLAAGDLFVALKGERFDANEFLAEAKKQGAVAAIAHHGLEAAGLAGLEVPDSLL 93
           V  D+R +  G LFVAL G RFD +++L E   +GAV A+    +  + L  L V D+ L
Sbjct: 28  VSIDSRNIKPGQLFVALTGPRFDGHDYLNEVAAKGAVGALVQRAVADSTLPQLLVADTRL 87

Query: 94  ALGALGAGWRAQFTLPLIAVTGSNGKTTVTQMIAAVLFAARADRGESALATAGNFNNEIG 153
           ALG LGA  RA FT P+ A+TGS+GKTTV +++A VL      RG    AT GN NN+ G
Sbjct: 88  ALGQLGALNRAAFTNPVAAITGSSGKTTVKELLAGVL----RTRG-PVHATRGNLNNDFG 142

Query: 154 VPLTLLRLRAQHQRAVLELGMNHPGEIARLAAMSRPTIALVNNAQREHQEFMATVEAVAV 213
            PLTLL L  +H  AV+ELG +  GEIA   A+++P + ++NNA   H       E +  
Sbjct: 143 APLTLLELAPEHTAAVIELGASRVGEIAYTVALTKPHVVVINNAGTAHVGEFGGPEKIVE 202

Query: 214 ENAAVFAVLPDDGTAVFPYGDAFTSLWTDMAHAGGSRRCMTF------GEHQDADISLDG 267
               +   L   G AV    D     W   A     R+ +TF       +   ++I++D 
Sbjct: 203 AKGEILEGLDASGIAVLNLDDKAFETWRVRA---AGRKVLTFAVLNAAADFHASNITVDA 259

Query: 268 AEWKQGAWAVRIRTPIGSFDARLHIAGRHNVVNALAATACALAAGVSTDIIAAGLSAFEP 327
               +G  +  + TP G+   +L++ G HNV NALAA A A A GVS   IA GL A +P
Sbjct: 260 ----RGCPSFTLHTPQGNEHVQLNLLGNHNVANALAAAAAAYALGVSLFGIATGLGAVQP 315

Query: 328 VKGRSRASEIVLADGRAVTLVDDSYNANPDSVIAAIDVLAALPGPRLLVLGDMGEVGERS 387
           VKGR+ A   +  +G  V  +DD+YNAN  S+ AAID+L +  G ++LVLGD+ E+G+ +
Sbjct: 316 VKGRTVAQ--LATNGMRV--IDDTYNANQSSICAAIDLLKSFEGRKVLVLGDIAELGDWA 371

Query: 388 PEFHAEVGDWARQRGIEAVYTFGNATAHTVAAFRGDADGRHF-NEFDALGAAVLARLPHV 446
            + H EVG +A  + ++A+Y  G   AH V+ F   A  RHF  + + + A   A     
Sbjct: 372 EQSHREVGAYAAGK-VDALYAVGPNMAHAVSVFGPGA--RHFVTQAELIQALTAAEHDKH 428

Query: 447 GSVLVKGSRSMKMERMVQAIAAQA 470
            ++L+KGSRS  ME +V A+   +
Sbjct: 429 TTILIKGSRSAVMENVVAALCGSS 452