Pairwise Alignments

Query, 706 a.a., UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase (EC 6.3.2.9) from Variovorax sp. SCN45

Subject, 450 a.a., UDP-N-acetylmuramoylalanine--D-glutamate ligase from Pseudomonas putida KT2440

 Score =  259 bits (662), Expect = 2e-73
 Identities = 177/442 (40%), Positives = 244/442 (55%), Gaps = 60/442 (13%)

Query: 263 PYVPTAAKDAAEFVAKIAELSATNPASAAVEEESPQLELAPP-VEPEAPKGYTPS----- 316
           P + T  +D  +   +  EL       A     SP L LA P ++  A +G   S     
Sbjct: 45  PELETLRRDYPQVEVRCGELDVDFLCRANELYVSPGLALATPALQQAAARGVKLSGDIEL 104

Query: 317 --------VLAITGTNGKTTVTSLTGQLVERGGKTVAVAGNIGPTLLDTLWAHIDADTLP 368
                   ++AI+G+N K+TVT+L G++  + GK VAV GN+G   LD L     AD + 
Sbjct: 105 FARHAKAPIVAISGSNAKSTVTTLVGEMAAKAGKRVAVGGNLGTPALDLL-----ADDI- 158

Query: 369 DVWVLELSSFQLDGVQDFEPTAATVLNLTQDHLDWHGDMSAYAAAKARIFGARGLMILNR 428
           +++VLELSSFQL+         ATVLN+++DH+D +  + AY  AK RIF     +++NR
Sbjct: 159 ELYVLELSSFQLETTDQLNAEVATVLNISEDHMDRYSGLPAYHLAKHRIFRGARQVVVNR 218

Query: 429 DDAGVMAMLPAPVKVKLQRPQIRTHVTFGAAMPLRPGDY---GIERVNGMAWLVRALEAD 485
            DA     L  P+ V     + R   TFG    L P D+   G+  V+G  +L  A E  
Sbjct: 219 QDA-----LSRPLPV-----EGRPCWTFG----LNPPDFKAFGLREVDGEKYL--AFE-- 260

Query: 486 ETQKRKRGAVVEEEIFLQRLMPADALRIRGRHNAMNALAALALASAAGCPLGPMLYGLRE 545
                            Q LMPA  L++RG HN  NALAALAL  AAG P  PML  LRE
Sbjct: 261 ----------------FQTLMPARELKVRGAHNQSNALAALALGHAAGLPFEPMLEALRE 304

Query: 546 YHGEPHRVEPIAIVDEVEYFDDSKGTNVGATVAALAGLGE--ERRVVVILGGEGKGQDFE 603
           + G  HR + +   + V ++DDSK TNVGA +AA+ GLG   E ++V+I GG+GKG +F 
Sbjct: 305 FGGLAHRCQWVRERNGVNWYDDSKATNVGAALAAIEGLGADIEGKLVLIAGGDGKGAEFT 364

Query: 604 PLAAPVRQYARAVVLIGRDASIIEAALASTGVSLMHAGSMEEAVQAAAARANPGDAVLLS 663
            L  PV+++ RAVVL+GRDA  +  AL    V L+   ++++AVQ  A  A  GDAVLLS
Sbjct: 365 ALREPVKRFCRAVVLLGRDAERLAEALGD-AVPLVRVKTLDDAVQQCAELAQAGDAVLLS 423

Query: 664 PACASFDMFRDYEHRADVFREA 685
           PACAS DMF+++E R  +F +A
Sbjct: 424 PACASLDMFKNFEERGRLFAQA 445



 Score = 65.5 bits (158), Expect = 5e-15
 Identities = 37/99 (37%), Positives = 56/99 (56%), Gaps = 4/99 (4%)

Query: 10  LILGLGASGLAMARWCARHGAVVTVADTREAPASLATLKAEWPEVAFVGGPFTAALVEGT 69
           +++GLG SG+++ R+ A  G    VADTRE P  L TL+ ++P+V    G      +   
Sbjct: 13  IVVGLGKSGMSLVRFLASRGIAFAVADTREQPPELETLRRDYPQVEVRCGELDVDFL--C 70

Query: 70  PIRAVYRSPGLSPATIAPVADAARAMGLPVGGELDLFAR 108
               +Y SPGL+ AT  P    A A G+ + G+++LFAR
Sbjct: 71  RANELYVSPGLALAT--PALQQAAARGVKLSGDIELFAR 107