Pairwise Alignments

Query, 271 a.a., Inner membrane protein YpjD from Variovorax sp. SCN45

Subject, 283 a.a., putative Membrane protein from Pseudomonas putida KT2440

 Score =  115 bits (289), Expect = 8e-31
 Identities = 96/272 (35%), Positives = 135/272 (49%), Gaps = 22/272 (8%)

Query: 5   IPSPLGVALGIATAVAYGFVAAAGARMSRQATQWALGIAWLLHALALAHGLI---GSEPR 61
           IP+ +   L IA A+  G   + G +  ++       IA L  A AL   LI   G    
Sbjct: 22  IPNLIAAGLYIAAAIYQGSYLSQGRKAEKRLLGLLGAIAVLAQAGALFFQLITPLGLSLD 81

Query: 62  FGFAPALSVTAWLVLTVYAVESRMYPQLKVRRALAWLGAAAVLLAILFA--GSPLHVSAS 119
           F  A +L   A + LT+ A        L V   L  LGA   LLA  FA  G+   ++  
Sbjct: 82  FFSAASLIAVAVISLTLLACLRIPVENLLV--LLFPLGAVTALLA-QFAPPGTVPLINEE 138

Query: 120 PWLPLHLALGIASYGLFGAAVVHAWLITRAEKQIRLATAEPHQGGV-----PLLTLERLT 174
           P +  H+ L I +YGLF  AV  + L+   ++Q++      H  G+     PL T+E L 
Sbjct: 139 PGILAHILLSILAYGLFTIAVFQSLLLLLQDRQLK----NKHPSGLIRNFPPLQTMESLL 194

Query: 175 FRFVTAGFVLLSATLLAGLLFSEQLYGTAGRFWKWDHKTTFSVLAWLTFAVLLIGRARFG 234
           F F+ AG+ LLS +L++G LF + L+          HKT  + +AW+ F+VLL GR R G
Sbjct: 195 FGFLWAGWCLLSLSLISGWLFLDNLFAQ-----HLAHKTLLACVAWVVFSVLLWGRTRLG 249

Query: 235 WRGRTARRVLYAGSALLLLAYVGSRFVLEVVL 266
           WRG  A R   +G  LL+LAY GS+ V E +L
Sbjct: 250 WRGHMAIRWTLSGFCLLMLAYFGSKLVREFIL 281