Pairwise Alignments

Query, 354 a.a., Conjugative transfer protein TrbB from Variovorax sp. SCN45

Subject, 344 a.a., component of type IV secretion system from Agrobacterium fabrum C58

 Score = 92.0 bits (227), Expect = 2e-23
 Identities = 90/318 (28%), Positives = 141/318 (44%), Gaps = 50/318 (15%)

Query: 20  LRTAMGPLIATALEDPDVVEIMLNPDRTLWVDRLSSGRAPMGVEMPEADGERIIRLVAAH 79
           LR  + P++   L+DP   E+ +N     +V R +       + +   D E I  L  A 
Sbjct: 7   LRILLKPILEW-LDDPRTEEVAINRPGEAFV-RQAGAFLKFPLPVSYDDLEDIAILAGAL 64

Query: 80  VGAEVHRGQPLLSAELPETGERFEGILPPAAPGPAFAL--RKRAIGVIPLE--------- 128
              +V    PL + ELP+ GER +  LPP  P    +L  R+ +  V  L+         
Sbjct: 65  RKQDVGPRNPLCATELPD-GERLQICLPPTVPSGTVSLTIRRPSSRVSSLKEVSSRYDAP 123

Query: 129 --------------------RYVVEGMMTAAQAGFLVRAVRERQNVLIAGATSSGKTTLA 168
                               RY   G + A    FL   V  R  +L+ G T SGKTT++
Sbjct: 124 RWNQWKERKKRHDQHDEAILRYYDNGDLEA----FLHACVVGRLTMLLCGPTGSGKTTMS 179

Query: 169 NALLAEIAATGDRVLVLEDTIELQCAARDHVPLRTRS-----GVVSMTQLVRSSMRLRPD 223
             L+  I    +R++ +EDT+EL     +HV L         G V+   L+++S+R+RPD
Sbjct: 180 KTLINAIPPQ-ERLITIEDTLELVIPHENHVRLLYSKNGAGLGAVTAEHLLQASLRMRPD 238

Query: 224 RVVVGEVRGAEALDLIKVWGTGHPGGIATIHAGSALGALLRMEQLILEVAVN---PPRAL 280
           R+++GE+R   A   +    +GHPG I+TIH  + +    ++  L+   A       R L
Sbjct: 239 RILLGEIRDDAAWAYLSEVVSGHPGSISTIHGANPVQGFKKLFSLVKSSAQGASLEDRTL 298

Query: 281 I---AEAVNVVIHIAGRG 295
           I   A AV+V++     G
Sbjct: 299 IDMLATAVDVIVPFRAHG 316