Pairwise Alignments

Query, 541 a.a., 3-methylmercaptopropionyl-CoA ligase (EC 6.2.1.44) of DmdB2 type from Variovorax sp. SCN45

Subject, 560 a.a., putative Long-chain-fatty-acid-CoA ligase from Pseudomonas putida KT2440

 Score =  164 bits (414), Expect = 1e-44
 Identities = 139/515 (26%), Positives = 234/515 (45%), Gaps = 47/515 (9%)

Query: 39  QVEINARRLSSALAKLGVQSGERCATIAWNNRRHLEIYYGVSGAGMVCHTVNPRLSAETL 98
           QVEI AR    AL  LGV +G+R    + N  +   +    +  G +   +NP      L
Sbjct: 54  QVEIYAR----ALIALGVNTGDRVGIWSPNCAQWCILQLASAKVGAILVNINPAYRVGEL 109

Query: 99  IYIVNHADDQVLFIDRTFLPIVAKLRSALSTVKHVILMGPRDEEASGMLDGLRFYDEVVA 158
            Y++  +  + L     F    +   + +  +   +      E AS  L  LR    + A
Sbjct: 110 EYVLRQSGCRWLVCAEAFK--TSDYHTMVQELVPELASAAPGELASECLPELRGVISLAA 167

Query: 159 SGDADY-PWPSIDE-------------------DLPSSLCYTSGTTGHPKGVLYSHRSTV 198
           +  A + PW +  E                   D P ++ YTSGTTG PKG   SH + +
Sbjct: 168 NPPAGFLPWHAFAERAGQTSVEACTARQQSLQFDQPVNIQYTSGTTGAPKGATLSHYNIL 227

Query: 199 LHA-LAGNSPDGIGVSARDAVMPVVPMFHVNAWGVPYIAA-AQGAKLVLPGPNLDGPSLA 256
            +  + G S   +G++ARD ++  VP++H     +  +     G+ ++ P    D     
Sbjct: 228 NNGFMVGES---LGLTARDRMVIPVPLYHCFGMVMANLGCITHGSTMIYPNDAFDAELTL 284

Query: 257 TLIDDEEVGLALGVPTIWMGLLAALRARGTKPKSLKRTIVGGAALPPSMFAAFRDEFGV- 315
             + +E   +  GVPT+++ +L           +L+  I+ GA  P  +     D+  + 
Sbjct: 285 RAVAEERATILYGVPTMFIAMLDHPSRAHMDLSTLRSGIMAGATCPIEVMRRVIDQMHMA 344

Query: 316 ELIHAWGMTETSPLGTLNQPLARHIHLDPQRQSEVRLGQ-GRPPYGVQLRVVDDGGAVLP 374
           E+  A+GMTETSP+          +   P    E+R+   GR    ++ ++VD  G ++P
Sbjct: 345 EVQIAYGMTETSPVS---------LQTGPDDDLELRVTTVGRTQPQLENKLVDADGCIVP 395

Query: 375 NDGKSPGKLQIRGHWIVSSYFG---AESSALTSDGWFDTGDIATLDANGYMVIRDRAKDI 431
                 G+L  RG+ ++  Y+    A + A+   GW  +GD+A +D  GY+ I  R KD+
Sbjct: 396 RG--EIGELCTRGYSVMLGYWDNPQATADAIDPAGWMHSGDLAVMDEQGYVRIVGRNKDM 453

Query: 432 IKSGGEWISSVDIENIAIGHPAIANAAAIGVPHPKWDERPVLVAVKKEGANVSEADLLAF 491
           I  GGE I   ++E     HPA+A+A  IG+P  ++ E  V       G + +  +L  +
Sbjct: 454 IIRGGENIYPRELEEFFYTHPAVADAQVIGIPCSRYGEEIVAWIKLHPGHSATVEELQGW 513

Query: 492 FKGRLPDWQIPDKAVFIDALPLSGTGKVFKNRLRE 526
            K R+  +++P    F+D  P++ TGKV K R+RE
Sbjct: 514 CKARIAHFKVPRYIRFVDEYPMTVTGKVQKFRMRE 548