Pairwise Alignments

Query, 494 a.a., Efflux transport system, outer membrane factor (OMF) lipoprotein from Variovorax sp. SCN45

Subject, 484 a.a., Probable efflux pump outer membrane protein TtgC from Pseudomonas putida KT2440

 Score =  313 bits (803), Expect = 7e-90
 Identities = 186/461 (40%), Positives = 268/461 (58%), Gaps = 8/461 (1%)

Query: 33  TLVVLAVLSGCASLAPALDPIALPVASNWRT----QPDTPGVAAAADLAWRAYFTDPALQ 88
           +L V A + G  SL P       PVA+ W       P      AAA+  WR +F DPALQ
Sbjct: 7   SLAVTAFILGGCSLIPDYQTPEAPVAAQWPQGPAYSPTQSADVAAAEQGWRQFFHDPALQ 66

Query: 89  ALIETALENNRDLRVALLRTEEASAAFRIQRAQQAPMVGVGVQQIRAGLPDGLQPLAGRS 148
            LI+T+L NNRDLRVA L  +   A +RIQRA   P V       R  +P  +       
Sbjct: 67  QLIQTSLVNNRDLRVAALNLDAYRAQYRIQRADLFPAVSATGSGSRQRVPANMSQTGESG 126

Query: 149 VLEVNAASVGISSWELDLWGRVRSMKTAAFEQWLATGQGHRAVELALIAQVADAYLGLRE 208
           +    +A++G+S++ELDL+GRVRS+   A E +L++ Q  R+ ++AL+A VA+AY   + 
Sbjct: 127 ITSQYSATLGVSAYELDLFGRVRSLTEQALETYLSSEQARRSTQIALVASVANAYYTWQA 186

Query: 209 LDERIALARRTVENQQSLAQIFQKRFELGHGSRLELTQVRTLLSQGKALQVQLELQREQQ 268
                 L   T++  +    + ++  E+G  S L+++Q RT +   +    Q +    Q 
Sbjct: 187 DQALFKLTEETLKTYEESYNLTRRSNEVGVASALDVSQARTAVEGARVKYSQYQRLVAQD 246

Query: 269 RNALALLLGSEPQLPPPSA-PMD-EALVMPELVHGLPSDLLLNRPDILAAEHALRARQAN 326
            N+L +LLG+   +P   A P++ +A  + E+  GLPSD+L  RPDI  AEH L+A  AN
Sbjct: 247 VNSLTVLLGTG--IPADLAKPLELDADQLAEVPAGLPSDILQRRPDIQEAEHLLKAANAN 304

Query: 327 IGAARAAFFPRIALTGGAGTVSTSLSDLFSSGTRAWLFQPTIELPIFDAGMRQANLDVSV 386
           IGAARAAFFP I+LT  AG++S  +  LFS G   WLFQP I LPIF+AG  +A+LD S 
Sbjct: 305 IGAARAAFFPSISLTANAGSLSPDMGHLFSGGQGTWLFQPQINLPIFNAGSLKASLDYSK 364

Query: 387 VRRDIAIAEYERAIQAAFRDVSDALAARQKLAEQLAVARQAHAAQTERLKLARMLFDAGS 446
           +++DI +A+YE+ IQ AF++VSD LAAR+   EQL   R    A  +  +LA   +  G 
Sbjct: 365 IQKDINVAKYEKTIQTAFQEVSDGLAARKTFEEQLQAQRDLVQANQDYYRLAERRYRIGI 424

Query: 447 AAHLEVLDAERDLLAVAQQLVQVRKAALSSQIGLYAALGGG 487
            ++L  LDA+R+L +  Q L+  R + L+S++ LY ALGGG
Sbjct: 425 DSNLTFLDAQRNLFSAQQALIGDRLSQLTSEVNLYKALGGG 465