Pairwise Alignments

Query, 794 a.a., diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) from Variovorax sp. SCN45

Subject, 861 a.a., two component sensor kinase from Agrobacterium fabrum C58

 Score =  241 bits (615), Expect = 1e-67
 Identities = 150/359 (41%), Positives = 211/359 (58%), Gaps = 19/359 (5%)

Query: 445 EATLRQSQKMEAVGQLTGGLAHDFNNLLGAISGSLE-LLKRKLEDNPGLSRYVDIGQTAT 503
           E  + Q+QKM AVG L GG+AHDFNN+L AI  S + LL +    +P  +  ++I + A 
Sbjct: 462 ETQMAQTQKMNAVGTLAGGIAHDFNNVLTAILLSSDHLLLQARPADPSFADLMEIKRNAN 521

Query: 504 KRAAALTHRLLAFSRQQTLEPKVVKVNQLVGGFEELVRRAI-GPQVALEVVAGIGIWPVH 562
            RAA L  +LLAFSR+QT+ P V+ +  ++G    LV R I G  V LEV  G  +WPV 
Sbjct: 522 -RAAVLVRQLLAFSRKQTMRPAVLNLTDVIGDLRMLVDRLISGTNVKLEVDYGRDLWPVK 580

Query: 563 VDPGQLENALLNLCINARDAMPGGGRLVIETANRSLDELAASEHQMLPGQ-YVSISVSDN 621
            D  Q E  L+NLC+NARDAMP GG++ I T N    E+AA      P +  V + V+DN
Sbjct: 581 TDLSQFEQVLINLCVNARDAMPDGGKITIRTRNVDEKEIAALGRPEFPAEDMVMVEVADN 640

Query: 622 GSGMPVDVIARAFDPFFTTKPIGVGTGLGLSMVYGFARQSGGHARIYSEVGTGTNVCMYL 681
           G+G+P +++ + F+PFFTTK +G GTGLGLSMVYG  +QSGG+    SEVG GT   +YL
Sbjct: 641 GTGIPPEIMDKIFEPFFTTKEVGKGTGLGLSMVYGIVKQSGGYIYPESEVGKGTAFRIYL 700

Query: 682 PRY---------EGGECAADDLPASNQVPQS----TGVGEIVLVVDDEASVRMLMVETLV 728
           PR+         + GE  A  + A+  V +     TG   +VL+V+DE +VR      L 
Sbjct: 701 PRHVVEVVQVMGQDGEMVAAPVVAAEPVKEEPLDLTGKSAVVLLVEDEEAVRRGGKRMLE 760

Query: 729 DLGYRVLHAADGPQAVELL-QANRSVALLVTDVGLPKGMNGRQVADAGRLINPSLRVLF 786
             GY V  A  G +A+E++ +    V ++V+DV +P+ M+G  +    R   P L+ +F
Sbjct: 761 TRGYTVHEAGSGIEALEVMEELEGKVDIVVSDVVMPE-MDGPSLLRELRKSYPDLKFIF 818



 Score = 26.9 bits (58), Expect = 0.005
 Identities = 20/78 (25%), Positives = 35/78 (44%), Gaps = 9/78 (11%)

Query: 199 VLRTIETGDDYRIEYRVVRPDGQLA-----WVRIVGRLERDASG---HPLSMAGTSQDIT 250
           ++  +  G D   E+R+++P G        W R+ GR+ +DA G   H   +A  + +  
Sbjct: 147 LINVLREGRDGYEEFRLLKPLGDDTGAGPHWYRLKGRVLKDAGGEGLHVFQIADITPERE 206

Query: 251 DVMLALRR-NELLEMLDH 267
           D     R     ++ LDH
Sbjct: 207 DQERFFRELQNAIDYLDH 224