Pairwise Alignments

Query, 662 a.a., Peptidoglycan D,D-transpeptidase MrdA (EC 3.4.16.4) from Variovorax sp. SCN45

Subject, 629 a.a., transpeptidase (penicillin-binding protein 2) from Pseudomonas putida KT2440

 Score =  492 bits (1266), Expect = e-143
 Identities = 265/608 (43%), Positives = 383/608 (62%), Gaps = 28/608 (4%)

Query: 15  RRRVVVVGCVVLFGFGLIGARLAFLQVVRHEELADRAESNRTAIVPIVPNRGQILDRNGV 74
           R+RVVV    ++    ++ ARL +LQ+++++  +  +E+NR  + PI P RG I DRNGV
Sbjct: 18  RKRVVVGAVAIMLLVCVLIARLYYLQIIQYDYHSTLSENNRVHVQPIPPTRGLIFDRNGV 77

Query: 75  VLASNYAAYTLEITPSKVGDLNAALDELDAIVEITPNDRRRF-KRLREDSRSFDSIPIRT 133
           ++A N  +++L +T  + G+    LD +  ++++T +DR  F KR+R+  R F+ +PI  
Sbjct: 78  IVADNRPSFSLSMTRERAGNWQEVLDTIVEVLDLTADDRALFEKRMRQGRRPFEPVPILF 137

Query: 134 RLSDEEVARFAAQRYRFPGIEIKARLFRSYPHGEVASHVIGYIGRINQREKTAMEDWDEE 193
            L++E++AR A  ++R PG+E+ A+L R YP G   +H +GY+GRIN++E   ++     
Sbjct: 138 ELNEEQIARVAVNQFRLPGVEVVAQLVRHYPQGAHFAHSVGYVGRINEKELKTLDP---- 193

Query: 194 EQANYRGTDYIGKLGIEQSYEKTLHGQTGVEQMETSAGGRAVRRLARHPATPGNTVMLSL 253
              NY GT +IGK GIE+ YE  LHGQ G E++ET+A GR +R L R    PG  ++LSL
Sbjct: 194 --VNYSGTHHIGKTGIERFYEAALHGQVGYEEVETNARGRVLRVLKRTDPKPGKDIVLSL 251

Query: 254 DIKLQKLVEDMFGERRGALVAIDPKTGEILAFVSKPTFDPNLFVEGIDHESWAALIESID 313
           DIKLQ+  E   G RRGA+VA+DP+TGE+LA VS+P+FDPNLFV GI  +++A L +SID
Sbjct: 252 DIKLQEAAEAALGGRRGAVVALDPRTGEVLAMVSQPSFDPNLFVTGISFKAYAELRDSID 311

Query: 314 KPLLNRALRGTYPPGSTYKPFMALAALETGARAADKIENDPGSY---SFGGRTFLSHRGG 370
           +PL NR LRG YPPGST KP +A+A L++G   A     DPG Y   ++  +    +R G
Sbjct: 312 RPLFNRVLRGLYPPGSTIKPAVAIAGLDSGVVNASSRVFDPGYYQLPNYDHKYRNWNRSG 371

Query: 371 LGGVDMHRAIQFSSNTYFYSLANEMGVDLIHEFMAPLGFGQFTGIDLLGESRGVLPSKAW 430
            G VD+  AI  S++TYFY LA++MG+D +  +M   G GQ   +D+  ES G++PS+ W
Sbjct: 372 DGWVDLDTAIMRSNDTYFYDLAHKMGIDRLSSYMNKFGIGQRVSLDMFEESAGLMPSREW 431

Query: 431 KRAAYRRPDMKTWHAGETISLGIGQGYNSFTMLQLASANATLANGGMHYRPHLVRAIK-- 488
           KRA  R    + W  GET+ LGIGQGY   T LQLA A A +AN G+  RPHL + I+  
Sbjct: 432 KRATRR----QAWFPGETLILGIGQGYMQATPLQLAQATALIANKGVWNRPHLAKTIEGL 487

Query: 489 ----DTVTEEIVAQVQPQARDLGYAQKHVDVVRNAMVAVTKGGTGTRVFAGAAYTSAGKT 544
               D   E+IV + +     + +  +   V+ NA       GT  +  AGA Y  AGK+
Sbjct: 488 PPVDDNPMEDIVLRDKSDWAKVTHGME--QVMHNAR------GTARKAAAGAQYRIAGKS 539

Query: 545 GTAQAVSLGPKARASGKALEERQRDHALYMAFAPAEAPTIAVAAIVENAGFGAAHAAPIV 604
           GTAQ V++    +     L+ER RDHAL++AFAPAEAP I V+ +VEN   G+  AAP+V
Sbjct: 540 GTAQVVAIKQGEKYDRNKLQERHRDHALFVAFAPAEAPKIVVSVMVENGESGSGVAAPVV 599

Query: 605 RRVFDYWI 612
           R++ D W+
Sbjct: 600 RQIMDAWL 607