Pairwise Alignments

Query, 662 a.a., Peptidoglycan D,D-transpeptidase MrdA (EC 3.4.16.4) from Variovorax sp. SCN45

Subject, 631 a.a., transpeptidase (penicillin-binding protein 2) from Pseudomonas putida KT2440

 Score =  443 bits (1139), Expect = e-128
 Identities = 249/605 (41%), Positives = 358/605 (59%), Gaps = 23/605 (3%)

Query: 16  RRVVVVGCVVLFGFGLIGARLAFLQVVRHEELADRAESNRTAIVPIVPNRGQILDRNGVV 75
           RR++    +V     ++  RL  LQV++H++    +E+NR  ++PI P RG I DRNGVV
Sbjct: 19  RRLLACAAMVFSLCAVLVGRLYVLQVLQHDQQTAVSENNRVHVLPIAPERGLIYDRNGVV 78

Query: 76  LASNYAAYTLEITPSKVG-DLNAALDELDAIVEITPNDRRRF-KRLREDSRSFDSIPIRT 133
           LA N  ++ L +T  + G D    LD L  ++ +T +DR++F K LR   + F+ + +  
Sbjct: 79  LADNKPSFDLTMTRERAGGDSAKVLDTLTQVLGLTEDDRKQFDKDLRRGRKPFEPVTLMV 138

Query: 134 RLSDEEVARFAAQRYRFPGIEIKARLFRSYPHGEVASHVIGYIGRINQREKTAMEDWDEE 193
            LS+E++A  A  ++R PG+E++ +  R YP     +H +GY+GRIN++E   ++  +  
Sbjct: 139 GLSEEQIALVAVNQFRLPGLEVEPQFIREYPLAGHFAHSVGYVGRINEKEAKTLDSTE-- 196

Query: 194 EQANYRGTDYIGKLGIEQSYEKTLHGQTGVEQMETSAGGRAVRRLARHPATPGNTVMLSL 253
               YRGT  IGK GIE+ YE  LHG  G E++ET+A GR +R L     TPG  ++L+L
Sbjct: 197 ----YRGTQSIGKTGIERFYESQLHGHVGYEEVETNAQGRVMRVLNHKDPTPGQDIVLTL 252

Query: 254 DIKLQKLVEDMFGERRGALVAIDPKTGEILAFVSKPTFDPNLFVEGIDHESWAALIESID 313
           D  LQ   E   G+RRG++V +DP  G++LA VS P+FDPNLFV+GI  + +AAL +SID
Sbjct: 253 DAHLQIAAEKALGDRRGSVVVLDPANGDVLAMVSNPSFDPNLFVKGISFKQYAALRDSID 312

Query: 314 KPLLNRALRGTYPPGSTYKPFMALAALETGARAADKIENDPGSY---SFGGRTFLSHRGG 370
           +PL NR LRG Y PGST KP +A+A L++G         DPG Y   ++  +    +R G
Sbjct: 313 RPLFNRVLRGLYAPGSTVKPEVAIAGLDSGVITPGSRVFDPGYYELPNYDHKYRNWNRSG 372

Query: 371 LGGVDMHRAIQFSSNTYFYSLANEMGVDLIHEFMAPLGFGQFTGIDLLGESRGVLPSKAW 430
            G VDM+ AI  S++TYFY LA+++G+D +H++MA  G GQ   +D+  E+ G++PS  W
Sbjct: 373 DGWVDMYTAIMRSNDTYFYDLAHKLGIDRLHDYMAEFGLGQKVSLDMFEEASGLMPSAEW 432

Query: 431 KRAAYRRPDMKTWHAGETISLGIGQGYNSFTMLQLASANATLANGGMHYRPHLVRAIKDT 490
           KRA  R    + W  GET+ LGIGQGY   T LQLA A + LA+ G+ +RPHL      T
Sbjct: 433 KRATRR----QAWFPGETLILGIGQGYMQVTPLQLAQATSLLASKGVWHRPHLAM----T 484

Query: 491 VTEEIVAQVQPQARDLGYAQKHV-DVVRNAMVAVTKG--GTGTRVFAGAAYTSAGKTGTA 547
           V  +      P   D+    KH  D V   M  V     G      AGA Y  AGK+GTA
Sbjct: 485 VGGDTPIDPNPMP-DIVLHDKHAWDQVSQGMQMVMHDPRGIARAAAAGAQYRIAGKSGTA 543

Query: 548 QAVSLGPKARASGKALEERQRDHALYMAFAPAEAPTIAVAAIVENAGFGAAHAAPIVRRV 607
           Q V++    R +     ER RD+AL++ FAPAE P++ VA ++EN   G   A P+VR V
Sbjct: 544 QVVAIKQGERYNRNKTLERHRDNALFVGFAPAEHPSVVVAVMIENGEAGGRVAGPVVREV 603

Query: 608 FDYWI 612
            D ++
Sbjct: 604 MDAYL 608