Pairwise Alignments

Query, 290 a.a., High-affinity branched-chain amino acid transport system permease protein LivH (TC 3.A.1.4.1) from Variovorax sp. SCN45

Subject, 658 a.a., hypothetical protein from Xanthobacter sp. DMC5

 Score =  197 bits (501), Expect = 5e-55
 Identities = 115/300 (38%), Positives = 170/300 (56%), Gaps = 21/300 (7%)

Query: 5   QAFNIAQLANALALASLLTILASGLALIFGLRDVMNFGHGALFMLGAYLGYTFSGLF--N 62
           Q   + QL N + L  +L ++A+GL L FG+ +++N  HG+LFMLGAYLG  F GL   +
Sbjct: 2   QLLFVEQLLNGVQLGVILFLMAAGLTLTFGIMNLVNLAHGSLFMLGAYLGVAF-GLVTGS 60

Query: 63  FWAALVIVPLLLALLGVLFEYAAIRPLQRRSHMDVALVTFGLALILSQVVIKVWGTAPLS 122
           F A  V   L   ++G++ E   IR L  RSH+D  + T GL  +L++    V+G  PL 
Sbjct: 61  FVAGFVAAGLATFVIGLVLERLVIRHLYARSHLDQVMCTVGLVYVLNEATRMVFGPEPLH 120

Query: 123 VSAPPSLAGSLDLF-GHAYPAYRIFLIAMGFGTCVLLAAWLKWTRSGMHVRAVSQQPMVA 181
              P  LAGS++L  G  YPAYR+ +I  G     LL   +  TR GM +RA +   ++ 
Sbjct: 121 APIPAFLAGSVELIPGAPYPAYRLAMIGAGLAIAGLLYVLIGRTRMGMLIRAGASNRVMT 180

Query: 182 RMMGVNTDRLSLLVVCLGTGFAGLAGVLAGPYLSVDPAMGASILISCLIVVVIGGLGSIG 241
            ++GVN   +  +V  +G   AG AG +A P L+V P MG ++LI  L+V+V+GG+GS+ 
Sbjct: 181 SVLGVNIGAIYAVVFGIGAALAGFAGYIAAPILTVYPGMGDNVLILALVVLVVGGMGSVK 240

Query: 242 GAIAAAVVFGLIQVIGA-----------------LISPTLAVMAPYMLLFIVLLWRPQGL 284
           GA  AA++ G+I  IG                   ++P LA M  Y+L+ ++L +RPQGL
Sbjct: 241 GAFVAALLVGVIDTIGRAYLKDLMALVLSPVAANTVAPALASMLIYILMAVILFFRPQGL 300



 Score = 43.1 bits (100), Expect = 2e-08
 Identities = 70/282 (24%), Positives = 112/282 (39%), Gaps = 36/282 (12%)

Query: 21  LLTILASGLALIFGLRDVMNFGHGALFMLGAYL------GYTFSGLFNFWAALVIVPLLL 74
           +  I A  L LI G   +++FGH     +GAY+          SG   +  A+ I  LL 
Sbjct: 365 IFAIAALSLDLILGQTGLVSFGHALYLGIGAYVVGILADAGVESGFVQWPLAMAISALLA 424

Query: 75  ALLGVLFEYAAIRPLQRRSHMDVALVTFGLALIL---SQVVIKVWGTAPLSVSAPPSLAG 131
           A L V+          R S     ++T   A ++   +  +    G   + ++   +  G
Sbjct: 425 AALSVV--------ALRTSGTFFIMITLAFAQMMFYGASSLYDYGGDDGMHLAVRSTFGG 476

Query: 132 SLDLFGHA---YPAYRIFLIAMGFGTCVLLAAWLKWTRSGMHVRAVSQQPMVARMMGVNT 188
            +DL+      Y A  + ++  G      L   L   R G  ++ +          G  T
Sbjct: 477 LVDLYDSRQFYYLALAVLVVLAG------LNIRLARARFGTVLKGIRINERRMEAAGFPT 530

Query: 189 DRLSLLVVCLGTGFAGLAG-VLAGPYLSVDPA-MGASILISCLIVVVIGGLGSIGGAIAA 246
            R  L    L     GLAG +LA     V P  M  +     +I+VV GGL +  GAI  
Sbjct: 531 FRYKLAACVLSAAVCGLAGAMLANAAEFVGPQYMDWTRSAELMIMVVAGGLATPFGAIIG 590

Query: 247 AVVF-GLIQVIGALISPTLAVMAPYMLLFIVLLWRPQGLGRG 287
           A+ + G+ + +  L   T+     +  L I+L++    LGRG
Sbjct: 591 ALAYLGIEKYLSDL---TIHWRLGFGALLILLVF----LGRG 625