Pairwise Alignments

Query, 290 a.a., High-affinity branched-chain amino acid transport system permease protein LivH (TC 3.A.1.4.1) from Variovorax sp. SCN45

Subject, 618 a.a., ABC transporter permease from Magnetospirillum magneticum AMB-1

 Score =  187 bits (474), Expect = 7e-52
 Identities = 108/287 (37%), Positives = 163/287 (56%), Gaps = 10/287 (3%)

Query: 6   AFNIAQLANALALASLLTILASGLALIFGLRDVMNFGHGALFMLGAYLGYTF----SG-- 59
           +F   Q  N LA AS L ++ASGL++IFG+  ++NF HG+ +MLGAY+ +T     SG  
Sbjct: 2   SFFFIQFLNGLASASSLFLVASGLSIIFGVSRIVNFAHGSFYMLGAYMAFTLVQKLSGGT 61

Query: 60  LFNFWAALVIVPLLLALLGVLFEYAAIRPLQRRSHMDVALVTFGLALILSQVVIKVWGTA 119
           +F FW A+V+    +AL+G + E   +R + +   +   L TFGL LI+  +V+ +WG  
Sbjct: 62  VFGFWGAIVLAAAAVALVGAVVEMVLLRRIYQAPELLQLLATFGLVLIVQDLVLVLWGPE 121

Query: 120 PLSVSAPPSLAGSLDLFGHAYPAYRIFLIAMGFGTCVLLAAWLKW--TRSGMHVRAVSQQ 177
            L     P L G++D+FG ++P Y   LI +G    VL   WL +  TR G  +RA +Q 
Sbjct: 122 DLLGPRAPGLKGAIDIFGQSFPQYDFVLIILG--PVVLGLLWLLFHRTRWGTLIRAATQD 179

Query: 178 PMVARMMGVNTDRLSLLVVCLGTGFAGLAGVLAGPYLSVDPAMGASILISCLIVVVIGGL 237
             +   +GVN   L   V  LG   AGL G +  P  +V+  M   I+    ++VVIGGL
Sbjct: 180 REMVAALGVNQAWLFTSVFTLGAFLAGLGGAVQLPREAVNHVMDLQIITEAFVIVVIGGL 239

Query: 238 GSIGGAIAAAVVFGLIQVIGALISPTLAVMAPYMLLFIVLLWRPQGL 284
           GS+ GA  AAV+ G +   G LI P L ++  ++++ ++L+ RP GL
Sbjct: 240 GSVLGAFLAAVIIGELNAFGILIFPQLTLVLTFLVMAVILVVRPWGL 286



 Score = 56.6 bits (135), Expect = 1e-12
 Identities = 65/268 (24%), Positives = 115/268 (42%), Gaps = 13/268 (4%)

Query: 21  LLTILASGLALIFGLRDVMNFGHGALFMLGAYLGYTFSGLFN--FWAALVIVPLLLALLG 78
           +  + A+ L  + G   +++FGH A F LG+Y        F     AALV  PLL A   
Sbjct: 342 IFALFAASLHFMMGTGGMVSFGHAAYFGLGSYGAALMVKYFGIPMLAALVTGPLLAAAAA 401

Query: 79  VLFEYAAIRPLQRRSHMDVALVTFGLALILSQVVIKVWGTAPLSVSAPPSLAGSLDLFGH 138
           ++F +  +    R +   +A++T   A I   VV + W +          L G       
Sbjct: 402 LVFGWFCV----RLAGAYLAMLTLAFAQIAYAVVFQ-WSS---FTGGDNGLIGIWPAPWA 453

Query: 139 AYPAYRIFLIAMGFGTCVLLAAWLKWTRSGMHVRAVSQQPMVARMMGVNTDRLSLLVVCL 198
           A P    +L     G  +L    + +   G  +RA     + A  +G+N          L
Sbjct: 454 ANPVAFYYLTLALCGGGILAVRRITFAPFGYTLRACRDSALRADSIGINLSSHRWAGFAL 513

Query: 199 GTGFAGLAGVL-AGPYLSVDP-AMGASILISCLIVVVIGGLGSIGGAIAAAVVFGLIQVI 256
              FAG+AG L A    SV P  +  +  +  L++V++GG+ ++ G +  A+V+  + V 
Sbjct: 514 AGFFAGIAGSLYAFLKGSVFPDTISIATSVDGLVMVLLGGVQTLTGPVVGALVYKTLHVT 573

Query: 257 GALISPTLAVMAPYMLLFIVLLWRPQGL 284
            +  +         +++ +V+ + PQG+
Sbjct: 574 ISSYTDQWRTALGVIIIVLVVAF-PQGI 600