Pairwise Alignments

Query, 408 a.a., Branched-chain amino acid ABC transporter, substrate-binding protein LivJ (TC 3.A.1.4.1) from Variovorax sp. SCN45

Subject, 403 a.a., hypothetical protein from Xanthobacter sp. DMC5

 Score = 79.0 bits (193), Expect = 2e-19
 Identities = 96/394 (24%), Positives = 145/394 (36%), Gaps = 19/394 (4%)

Query: 12  AAAAAVLALTVPLAMQAQAQAQTATGPIKIGVLTIDAGPFATYASLVEDSSRAAVDMLNA 71
           A AA +L+L+   A   +        P++IGVL   +G    YA +    S  A  M   
Sbjct: 9   AIAATLLSLSPAFAADPK--------PLRIGVLNDQSG---IYADMAGPGSVIAAKMAVE 57

Query: 72  E--GGALGRKFEVVVQSHAGTPSSAIAAVNRLVQQGGVSFVTGQTPTSHSLAISPKLAAL 129
           +  G  LGR  E++   H   P    A V R + + GV  +     +S  LA+       
Sbjct: 58  DFGGSVLGRPVEIIAGDHQNKPDVGSAIVTRWIDEDGVDVIADIPTSSVLLAVQEIGRTK 117

Query: 130 NALMIDVYSQGDDLMTKACQPNFFRVTTPDSVYAAMLREFVKKSGAKTWNLISPDYAVGH 189
           N L++       D   KAC P     T      AA     + K G   W  I+ DYA G 
Sbjct: 118 NKLVLASTGGSSDFTGKACAPTGIHWTYDTYALAAGTGASLAKDG--PWFFITADYAFGT 175

Query: 190 TFAAKFSDIVKAQGGTVQMSLFAAQGTNDFGSYITQ-LAKPADALMVTLYMSDGNSFAKQ 248
                 +  V+  GG V  S+   QGT DF S++ Q     A  +      SD  +  KQ
Sbjct: 176 ALERDTAKAVEKGGGKVVGSVKHPQGTADFSSFLLQGQGSGAKLIAFANAGSDTVNAIKQ 235

Query: 249 QKQFGLFDKYKTVLGNGFATEFQLAAQGDSVLGVLNGLSYHNTMPGERNAAFVKSYEARF 308
             +FG+      + G         A    +  G++    ++  +  E  A   + YE R 
Sbjct: 236 ANEFGIPQSGIKLAGLYLHITDIHAIGLQTAQGLILTQGFYWDLNDETRAWSKRFYE-RH 294

Query: 309 KRKPIYTDADMMVALEMLRAAIVKAKSTDVSAVRTALAGLKAPTVFGEVEMRAADHTLIR 368
           K  P    A    A+     A+  A +TD + V   +        F        D  ++ 
Sbjct: 295 KAMPTMGQAGTYSAILHYLKAVKAAGTTDTATVAAQMKATPVDDFFSHGGRIREDGRMVH 354

Query: 369 QLGVAEVVRTPDGKATTFAMRSIE--PGSALFPP 400
            L + +V    + K     ++ I   PG   F P
Sbjct: 355 DLYLLQVKTPAEQKYPWDYLKLIRTIPGDEAFRP 388