Pairwise Alignments

Query, 408 a.a., Branched-chain amino acid ABC transporter, substrate-binding protein LivJ (TC 3.A.1.4.1) from Variovorax sp. SCN45

Subject, 402 a.a., hypothetical protein from Xanthobacter sp. DMC5

 Score = 90.5 bits (223), Expect = 8e-23
 Identities = 94/338 (27%), Positives = 147/338 (43%), Gaps = 15/338 (4%)

Query: 8   LVSQAAAAAVLALTVPLAMQAQAQAQTATGPIKIGVLTIDAGPFATYASLVEDSSRAAVD 67
           +V+ A   AV  L  P      A AQ + G IKIG+L+  AG ++      E S++AA  
Sbjct: 5   MVAAALGTAVAGLAGP------AFAQMSDGKIKIGLLSDLAGVYSDING--EGSAQAARL 56

Query: 68  MLNAEGGAL-GRKFEVVVQSHAGTPSSAIAAVNRLVQQGGVSFVTGQTPTSHSLAISPKL 126
                G A+ G   E++V  H      A +   + +    V  +     ++ +LA+    
Sbjct: 57  AAEEFGNAINGVPVEIIVGDHQNKADVAASLARKWIDTEQVDVIADVPNSAAALAVQAIT 116

Query: 127 AALNALMIDVYSQGDDLMTKACQPNFFRVT-TPDSVYAAMLREFVKKSGAKTWNLISPDY 185
                + +       DL  KAC P  F  T    SV +A  R  V K G K+W  I+ DY
Sbjct: 117 KERKRIFLMSGPGSVDLTGKACSPYGFMWTWDTHSVSSATARALVNK-GDKSWFFITADY 175

Query: 186 AVGHTFAAKFSDIVKAQGGTVQMSLFAAQGTNDFGSYITQLAKPADALMVTLYMSDGNSF 245
           A GH+   + S  VKA GGTV+  +     T+DF S++ Q A+ + A +V L  + G++ 
Sbjct: 176 AFGHSLEEEASKTVKAMGGTVKGGVRVPLATSDFSSFLLQ-AQASGAKVVALANAGGDTI 234

Query: 246 --AKQQKQFGLFDKYKTVLGNGFATEFQLAAQGDSVLGVLNGLSYHNTMPGERNAAFVKS 303
              KQ  +FGL    +T+ G         A       G++   S++  M  +   A+ K 
Sbjct: 235 NSVKQATEFGLPQGGQTLAGLLLNINDIHALTLPVAKGLILSNSFYWDM-NDETRAWSKK 293

Query: 304 YEARFKRKPIYTDADMMVALEMLRAAIVKAKSTDVSAV 341
           +E +  RKP    A +  A+     A+    + D   V
Sbjct: 294 FEEKTGRKPSMNQAGVYSAVRHYLQAVKDLGTDDADKV 331