Pairwise Alignments

Query, 408 a.a., Branched-chain amino acid ABC transporter, substrate-binding protein LivJ (TC 3.A.1.4.1) from Variovorax sp. SCN45

Subject, 384 a.a., ABC transporter, substrate-binding protein (cluster 4, leucine/isoleucine/valine/benzoate) from Variovorax sp. SCN45

 Score = 84.7 bits (208), Expect = 4e-21
 Identities = 95/361 (26%), Positives = 155/361 (42%), Gaps = 17/361 (4%)

Query: 14  AAAVLALTVPLAMQAQAQAQTATGPIKIGVLTIDAGPFATYASLVEDSSRAAVDMLNAEG 73
           A AVLA+    ++ A + A     PIKIG +    GP +      + +  + V  +NA G
Sbjct: 9   ALAVLAIC---SLGAMSPAFAQGKPIKIGAVVSATGPASFLGDPQQKTLESYVQKINAGG 65

Query: 74  GALGRKFEVVVQSHAGTPSSAIAAVNRLVQQGGVSFVTGQTPTSHSLAISPKLAALNALM 133
           G LGRK E+V+   A   + A A   RL+ Q  V  + G + T  ++A+ P++ A  A +
Sbjct: 66  GVLGRKLELVLYDDASDANKANAFARRLIIQDEVDAILGASTTGSTMAMVPQVEA--AKI 123

Query: 134 IDVYSQGDDLMTKACQPNFFRVTTPDSVYAAMLREFVKKSGAKTWNLISPDYAVGHTFAA 193
            ++      ++ +  +P  F++   D + A  + E +KK G   + L+S     G +   
Sbjct: 124 PNISLAAASVIVEPVRPWVFKMPHSDRMAAQKVLEEMKKRGFMQFALLSDTGGFGKSGRT 183

Query: 194 KFSDIVKAQGGTVQMSLFAAQGTNDFGSYITQL-AKPADALMVTLYMSDGNSFAKQQKQF 252
           +   +  A G  V       +   D    +T++ + PA A++V          A+  +Q 
Sbjct: 184 ETLKMAGALGMKVVEDQQYGEKDTDMTPQLTKVKSSPAQAILVFGTGQAPAIIARNYQQL 243

Query: 253 GLFDKYKTVLGNGFATEFQLAAQGDSVLGV---LNGLSYHNTMPG-----ERNAAFVKSY 304
           G+     T  G   +TEF +   G +  G+      L     +P      + +A +VK+Y
Sbjct: 244 GVQQPLYTTHGQA-STEF-IRIAGKAAEGIRMPSPALLIAKALPASDPQRDVSAEYVKAY 301

Query: 305 EARFKRKPIYTDADMMVALEMLRAAIVKAKSTDVSAVRTALAGLKA-PTVFGEVEMRAAD 363
           E +FK            AL +L  AI +A  TD   VR AL   K    V G   M   D
Sbjct: 302 EGQFKSDVSTFGGYAHDALLILVDAIKRAGGTDKDKVRAALEQTKGFVGVSGIYTMSPQD 361

Query: 364 H 364
           H
Sbjct: 362 H 362



 Score = 24.3 bits (51), Expect = 0.007
 Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 2/72 (2%)

Query: 334 KSTDVSAVRTALAGLKAPT--VFGEVEMRAADHTLIRQLGVAEVVRTPDGKATTFAMRSI 391
           K TD++   T +    A    VFG  +  A      +QLGV + + T  G+A+T  +R  
Sbjct: 205 KDTDMTPQLTKVKSSPAQAILVFGTGQAPAIIARNYQQLGVQQPLYTTHGQASTEFIRIA 264

Query: 392 EPGSALFPPPSP 403
              +     PSP
Sbjct: 265 GKAAEGIRMPSP 276