Pairwise Alignments

Query, 292 a.a., High-affinity branched-chain amino acid transport system permease protein LivH (TC 3.A.1.4.1) from Variovorax sp. SCN45

Subject, 291 a.a., ABC transporter, permease protein 1 (cluster 4, leucine/isoleucine/valine/benzoate) from Variovorax sp. SCN45

 Score =  173 bits (439), Expect = 4e-48
 Identities = 103/294 (35%), Positives = 158/294 (53%), Gaps = 15/294 (5%)

Query: 5   VVVSGLTAGSLYCLVAVGFNILYRPTKVFNFAQGDLVMVGAMASALLMTQW--HWPWVPA 62
           ++ SG+  G +Y ++A G+ + +  +   NF QG+ +M+GAM    L+     +W  +P 
Sbjct: 7   LIFSGIALGMIYAVIAFGYQLTFATSDTLNFGQGNALMLGAMVGLTLVNMGLNYWLMIPL 66

Query: 63  ---FAAAAAAVALLALLEERVAVAPVLRRSASGTGWIITTLAVAMIMTNIVGKVWGADPI 119
              F A   AV       ER+AV P ++   S  GWI++T+A+ +I TN+   VWG D +
Sbjct: 67  VCLFGAFQGAVV------ERIAVRPAIKIK-SEFGWIMSTIALGIIFTNVAENVWGRDDL 119

Query: 120 VVPAPAPLSNDMLGLSAVNISSYQAALIVLTIALVAVVELLYA-SLWGKATLAVAEDRDA 178
             P+P P S   L     N+   +  +++  + ++  VEL    S++GKA +A   DRDA
Sbjct: 120 KFPSPLPESP--LHFLGANVLPMEILVVIGALLMMLAVELFNRRSIYGKAVVATFNDRDA 177

Query: 179 ALLRGIDPVAISRWSFALGGAFAALTGALAAPVLSASTGLGAMLLLKGFAAAAIGGLGSN 238
           A L GI+   +  +S+AL    AA  G L AP+      +GA+L LK FA A IGGL S 
Sbjct: 178 AKLMGINTGLVITFSYALSSMTAAFAGVLIAPLTLTGASMGAVLGLKAFAVAIIGGLTSG 237

Query: 239 RGALLAGYLIGMAEAASALLLSPGYHNAVMLVLVLAVLLAKPGGLFSSLEARTV 292
            G ++ G ++G+AE  +   LS GY +   LVL+L VL  +P GLF     + V
Sbjct: 238 MGIVVGGIILGIAETTTGFYLSTGYKDVPGLVLLLIVLAVRPSGLFGKAAIKKV 291