Pairwise Alignments

Query, 292 a.a., High-affinity branched-chain amino acid transport system permease protein LivH (TC 3.A.1.4.1) from Variovorax sp. SCN45

Subject, 304 a.a., High-affinity branched-chain amino acid transport system permease protein BraD from Pseudomonas putida KT2440

 Score =  101 bits (252), Expect = 2e-26
 Identities = 76/300 (25%), Positives = 143/300 (47%), Gaps = 25/300 (8%)

Query: 1   MWIDVVVSGLTAGSLYCLVAVGFNILYRPTKVFNFAQGDLVMVGAMASALLMTQWHWPWV 60
           +++  +V+GLT GS+Y L+A+G+ ++Y    + NFA G++ M+ A  +A+ +    +  V
Sbjct: 4   IFLQQLVNGLTLGSVYGLIAIGYTMVYGIIGMINFAHGEVYMISAYLAAISLALLAYFGV 63

Query: 61  PAFAAAAAAVALLALLE--------ERVAVAPVLRRSASGTGWIITTLAVAMIMTNIVGK 112
            +F        L  ++         ER+A  P+  R+++    +I+ + +++I+ N    
Sbjct: 64  ESFPLLMLGTLLFTIVVTGVYGFTIERIAYKPL--RNSTRLAPLISAIGISLILQNYAQI 121

Query: 113 VWGADPIVVPAPAPLSNDMLGLSAVNISS-----YQAALIVLTIALVAVVELLYASLW-- 165
             GA    VP        + G   V + S         + +L  A V +  L Y   +  
Sbjct: 122 SQGARQQGVPTL------LEGAMRVEVGSGFVQLTYTKIFILVAAFVGMGLLTYVIKYTK 175

Query: 166 -GKATLAVAEDRDAALLRGIDPVAISRWSFALGGAFAALTGALAAPVLSASTGLGAMLL- 223
            G+   A  +DR  A + GI+   +  + F +G   AAL G L              ++ 
Sbjct: 176 LGRMCRATQQDRKMASILGINTDRVISYVFVIGAVMAALAGVLITMNYGTFDFYAGFIIG 235

Query: 224 LKGFAAAAIGGLGSNRGALLAGYLIGMAEAASALLLSPGYHNAVMLVLVLAVLLAKPGGL 283
           +K F AA +GG+GS  GA+L G ++G++E+  + L++  Y +     L++ +L+ +P GL
Sbjct: 236 IKAFTAAVLGGIGSLPGAMLGGIILGISESLFSGLINSDYKDVFSFSLLVMILIFRPQGL 295