Pairwise Alignments

Query, 401 a.a., hypothetical protein from Variovorax sp. SCN45

Subject, 378 a.a., branched-chain amino acid ABC transporter, periplasmic amino acid-binding protein (braC-like) from Pseudomonas putida KT2440

 Score = 56.2 bits (134), Expect = 2e-12
 Identities = 92/372 (24%), Positives = 145/372 (38%), Gaps = 53/372 (14%)

Query: 16  AATIGPFAGGAAFAQAHKGDIVVGAAQPITGVFAFAGLAMNNGLADYIDWKNANGGIAGH 75
           A  +    G +++ QA   D+ +G A P+TG  A  G     G     D  NA GG+ G 
Sbjct: 12  ALAVATALGVSSYVQA---DVKIGVAGPMTGANAAFGEQYMKGAQAAADKINAAGGVNGE 68

Query: 76  KLRYVAEDSGFKVDQSAAIFKKIMASEKPSFFYCDGTPSVKAVAQDAIASNHVMTSSTSL 135
           K+  V  D   +  Q+ A+  +++  +K           V  V        H  +S+T  
Sbjct: 69  KIVLVKGDDACEPKQAVAVANRLVDQDK-----------VIGVV------GHFCSSNTIP 111

Query: 136 AISVADPVKMPHHFVPGATYPRLHEILMEHIAR-----TSQGAAA---------KPRIAY 181
           A  V D   +     PG+T P++ E  +  + R       QG  A           ++A 
Sbjct: 112 ASEVYDEAGV-IAITPGSTNPQVTERGLSAMFRMCGRDDQQGIVAGDYIVDVLKGKKVAV 170

Query: 182 VYADTEFGRDGIPGGKARAEKLGL-PIVAEIVTKQSGVDVTTEVAQLRRAKPDIVIFQGY 240
           ++    +G+      KA+ EK G+ P++ E +T+    D +  V ++R    D+V F G 
Sbjct: 171 LHDKDTYGQGLADATKAQLEKRGVKPVLYEGLTR-GEKDFSAVVTKIRSTGADVVYFGGL 229

Query: 241 ILAPMPEFVRQMREAGLNPQIMGTAWGLDKPAYDALAALGVRLTGVSMYRYGHETDSPMI 300
                P  VRQ+RE GL      +  G+      + A     + GV M         P  
Sbjct: 230 HPEAGP-LVRQLREQGLKDVKFMSDDGIVTDELVSTAGGAQYVDGVYMTFGADPRLLPDS 288

Query: 301 KAMRDHAAKARPDMKFISPF-YVSSWLSGMVF-------GEIAERCLKANKPLVLPNMKA 352
           KA+ +   KA  + +  + + Y S       F       GE A + LKAN          
Sbjct: 289 KAVVEEFRKAGTEPEGYTLYAYASLQALAAAFNGAKSNKGEDAAKWLKANP-------VQ 341

Query: 353 ALESMKDWDSGG 364
            +   K WDS G
Sbjct: 342 TVMGEKKWDSKG 353