Pairwise Alignments

Query, 290 a.a., High-affinity branched-chain amino acid transport system permease protein LivH (TC 3.A.1.4.1) from Variovorax sp. SCN45

Subject, 293 a.a., ABC transporter permease from Pseudomonas simiae WCS417

 Score =  173 bits (439), Expect = 4e-48
 Identities = 104/294 (35%), Positives = 165/294 (56%), Gaps = 5/294 (1%)

Query: 1   MSEFLEYSLLGLLSGGVMALIALSFVLIYKGTGVVNFAVGEVMMLGAYIYYAGAVTFGLP 60
           M+ F E  L GLL+G + +L+A+ FVLIYK +GV NFA G  M+L A + +      G+P
Sbjct: 1   MTFFFETLLGGLLAGTMYSLVAIGFVLIYKASGVFNFAQGS-MLLFAALTFVSLHDQGVP 59

Query: 61  PWVAFALALAVIGVLAIAIERAVLRPLSGQPAVAVLMATIGMASIVHGGVEAVWGGDTLS 120
             +A  + + V+ V A+ IER VLRPL  +  + + MAT+G++ I+ G  + + G    +
Sbjct: 60  FALALLVTVIVMIVGALLIERLVLRPLVNRSQITLFMATLGLSFIIEGLAQGLMGSQVRA 119

Query: 121 PPTLLPRTPLLLGEVLIPGTVLGNFAVAAVLIGGFLAFFRYSKTGIALRATASDPVTAAT 180
               +   PL +G +++    L   A A VL+      F  ++ G++LRA A D   A +
Sbjct: 120 LDLGIDDVPLFVGPLMLSQFDLIAAAAAVVLVTVLALLFNKTRIGVSLRAVADDTTAALS 179

Query: 181 LGININYAQRLTWLLSGLVGTFAGVLIASSAGLSPLLASAALSVFAAIILGGLDSILGAI 240
           +GIN+N   ++ W ++G+VG  AG+L  +  G+   L+   L     +I+GG  SI GAI
Sbjct: 180 IGINLNRIWQIVWAVAGIVGLVAGLLWGARQGVQFSLSLVVLKALPVLIIGGFTSIGGAI 239

Query: 241 VASLLIGWVESVSAGY----LGGKSRDVVPYVVVLAILVVKPYGMFGTRTIERL 290
           V  L++G  E+++  Y    +GG       YV+ LA L ++P G+FG R IER+
Sbjct: 240 VGGLIVGAAENLAEVYIGPLIGGGITPWFAYVLALAFLYIRPAGLFGERAIERV 293