Pairwise Alignments

Query, 553 a.a., Cyclohexanecarboxylate--CoA ligase from Variovorax sp. SCN45

Subject, 548 a.a., AMP-binding domain protein from Pseudomonas putida KT2440

 Score =  181 bits (460), Expect = 5e-50
 Identities = 171/538 (31%), Positives = 249/538 (46%), Gaps = 46/538 (8%)

Query: 25  TPDDFLAASIDRTPDKAALVGYRADRSEPVRLSYRELGDKVTLAAGALRGLGVLPGDVVA 84
           +P  FL  +    P + A++ Y A R      SYR+L ++    A AL  +GV PG+ VA
Sbjct: 21  SPLSFLKRAAQVYPQRDAVI-YGARR-----YSYRQLHERSRALASALERVGVQPGERVA 74

Query: 85  VQVPNWWEFVVVSLACGRIGAVVNPLMPIFRERELEFMLGFAEAKVLVVPAMFRGFDHAA 144
           +  PN  E +         GAV+  +      R + F+L    AKVL+    F    + A
Sbjct: 75  ILAPNIPEMLEAHYGVPGAGAVLVCINIRLEGRSIAFILRHCAAKVLICDREFGAVANQA 134

Query: 145 MADSLKGRLPKLQQVLVVDGQGDDAFDRVLLGGTARVEP-PAMASPTPSVLQPGD---LS 200
           +A         L    ++ G  DD  +R  L      E   A   P   +  P +     
Sbjct: 135 LA--------MLDAPPLLVGIDDDQAERADLAHDLDYEAFLAQGDPARPLSAPQNEWQSI 186

Query: 201 VMMFTSGTTGSPKGVM--HTSNTLLACNRALSERFGLTTDDVLLACSPVGHMTGYAAVMM 258
            + +TSGTTG PKGV+  H    L AC  AL   F L    V L   P+ H  G++    
Sbjct: 187 AINYTSGTTGDPKGVVLHHRGAYLNACAGALI--FQLGPRSVYLWTLPMFHCNGWSHTWA 244

Query: 259 LGIYLGSTVVLQDIWDGKRGVALMAAEGVTYTAASSPFLSDICNAVAEGAPRPDRLRSFL 318
           + +  G+ V L+ +       A+ A   VT+ +A+   +S + +A  E A  P    S +
Sbjct: 245 VTLSGGTHVCLRKVQPDAINAAI-AEHAVTHLSAAPVVMSMLIHA--EHASAPPVPVSVI 301

Query: 319 CGGAPIPPVLIERAARELDLKVCSLWGMTESLS-STLTEPSRAADK---SASTDGRALDG 374
            GGA  PP  +  A       +   +GMTES   STL       D+    A     +  G
Sbjct: 302 TGGAA-PPSAVIAAMEARGFNITHAYGMTESYGPSTLCLWQPGVDELPLEARAQFMSRQG 360

Query: 375 VG------IRIVDFD-GKPLPPG--ETGRLMVRGAQMSLGYYKRPDIATYD-AEGWFDTG 424
           V         ++D D G+P+P      G L+VRG  +  GY   P+      A GW  TG
Sbjct: 361 VAHPLLEEATVLDTDTGRPVPADGLTLGELVVRGNTVMKGYLHNPEATRAALANGWLHTG 420

Query: 425 DLAYMDAEGYIRINGRTKDVLIRGGENVPVVEIEALLYKHPAVAMAAIVGFPDDRLGERA 484
           DLA +  +GY+ I  R KD++I GGEN+  +EIE +LY+HP V  AA+V  PD R GE  
Sbjct: 421 DLAVLHLDGYVEIKDRAKDIIISGGENISSLEIEEVLYQHPEVVEAAVVARPDSRWGETP 480

Query: 485 CAFVELRPGATLDLAAVQAYMEACKVAKQYW--PERVEVLDMVPRTPSGKIQKYLLKE 540
            AFV LR  A   LA+    +  C+    ++  P  V ++D+ P+T +GKIQK++L+E
Sbjct: 481 HAFVTLRADA---LASGDDLVRWCRERLAHFKAPRHVSLVDL-PKTATGKIQKFVLRE 534