Pairwise Alignments

Query, 416 a.a., RND efflux system, membrane fusion protein from Variovorax sp. SCN45

Subject, 378 a.a., Multidrug efflux RND membrane fusion protein MexC from Pseudomonas putida KT2440

 Score =  211 bits (536), Expect = 4e-59
 Identities = 142/372 (38%), Positives = 204/372 (54%), Gaps = 18/372 (4%)

Query: 27  LAVAAAVVGMYSFKAEANNTPAAPQATPVSVATVASSEINAWDEFSGRLEAVERVDVRSR 86
           LA+A A+ G    +  A    AA  + PV + T+A  ++    E  GR+E +   +VR+R
Sbjct: 13  LAMAIALAGC---EPAAEQDGAANASYPVEIVTLAPEQVALAAELPGRVEPMRVAEVRAR 69

Query: 87  VAGAVQAVHFREGALVKQGDLLVTIDPAPYAAEVERAEAQVASAQARQSFSRSEQERAKR 146
           V G V    F EGA VK GD+L  IDPAP+ A + RAEA +A AQA Q  +++  +R + 
Sbjct: 70  VPGIVLHKRFEEGADVKAGDVLFQIDPAPFKAALARAEADLARAQAVQQEAQARVKRYEP 129

Query: 147 LWDDKAIAQREFDERVNAGREADANLRAAQASLQSARLNLGYTQVRAPVSGRIGRIEVTV 206
           L   +A++Q++FD      R A A +R+AQA +Q+ARLNLGY  V AP+SGRIGR   T 
Sbjct: 130 LVKIEAVSQQDFDSATAELRSAGAAVRSAQADVQAARLNLGYATVTAPISGRIGRALATE 189

Query: 207 GNLVAAGPGAPVLTTLVSVSPIYASFD---ADEQVITRALKDLPTGSSARGQIESIPVQM 263
           G LV  G  A ++  +  + PIY  F    AD   + +ALKD        G + S   Q 
Sbjct: 190 GALVGQGE-ATLMARIQQLDPIYIDFTQSAADALRLRQALKD--------GAL-SADSQR 239

Query: 264 GTAGLDGTPF--TGKLQLIDNQVDAKSGTVRVRASFDNKDGALIPGQFARIRMGQARSDS 321
            TA ++GT F  +G+L   D  VD  +G V +R  FDN DG L+PG + R+R  Q   + 
Sbjct: 240 LTAQVEGTDFQRSGELMFTDVSVDRGTGQVILRGRFDNADGTLLPGMYVRVRTPQGTDNH 299

Query: 322 ALLVSERAIGTDQNKKFVMVVGEDSKATYREVTLGASINGLRVVSKGLKAGDRVIVNGLQ 381
           A+LV +RA+    + +  ++V  +  A  R V  G        +++GL+ GD+VIV    
Sbjct: 300 AILVPQRAVQRGSDGQARVLVATNGIAEARAVRTGVMQGSRWQITEGLEPGDQVIVGSPA 359

Query: 382 HIRPGALVAPQQ 393
            + PG  VAP Q
Sbjct: 360 GLAPGMPVAPAQ 371