Pairwise Alignments

Query, 416 a.a., RND efflux system, membrane fusion protein from Variovorax sp. SCN45

Subject, 385 a.a., multidrug transporter subunit MdtE from Escherichia coli ECRC62

 Score =  178 bits (452), Expect = 2e-49
 Identities = 114/340 (33%), Positives = 174/340 (51%), Gaps = 3/340 (0%)

Query: 48  AAPQATPVSVATVASSEINAWDEFSGRLEAVERVDVRSRVAGAVQAVHFREGALVKQGDL 107
           AA     V V T++   +N   E  GR    E  ++R +V G +   +F EG  V QGD 
Sbjct: 29  AAAMTPEVGVVTLSPGSVNVLSELPGRTVPYEVAEIRPQVGGIIIKRNFIEGDKVNQGDS 88

Query: 108 LVTIDPAPYAAEVERAEAQVASAQARQSFSRSEQERAKRLWDDKAIAQREFDERVNAGRE 167
           L  IDPAP  AE+  A+  +A A +  S +R    R   L     ++++++D       E
Sbjct: 89  LYQIDPAPLQAELNSAKGSLAKALSTASNARITFNRQASLLKTNYVSRQDYDTARTQLNE 148

Query: 168 ADANLRAAQASLQSARLNLGYTQVRAPVSGRIGRIEVTVGNLVAAGPGAPVLTTLVSVSP 227
           A+AN+  A+A+++ A +NL Y  V +P++G  G+  VTVG LV A   A  L T+  + P
Sbjct: 149 AEANVTVAKAAVEQATINLQYANVTSPITGVSGKSSVTVGALVTANQ-ADSLVTVQRLDP 207

Query: 228 IYASFDADEQVITRALKDLPTGSSARGQIESIPVQMGTAGLDGTPFTGKLQLIDNQVDAK 287
           IY       Q   R  +++ +G   + Q  S PVQ+          TG L+  D  VD  
Sbjct: 208 IYVDLTQSVQDFLRMKEEVASGQIKQVQ-GSTPVQLNLENGKRYSQTGTLKFSDPTVDET 266

Query: 288 SGTVRVRASFDNKDGALIPGQFARIRMGQARSDSALLVSERAIGTD-QNKKFVMVVGEDS 346
           +G+V +RA F N +G L+PG +    + +    + LLV +  +  + Q K   +++ +D 
Sbjct: 267 TGSVTLRAIFPNPNGDLLPGMYVTALVDEGSRQNVLLVPQEGVTHNAQGKATALILDKDD 326

Query: 347 KATYREVTLGASINGLRVVSKGLKAGDRVIVNGLQHIRPG 386
               RE+    +I    VV+ GL+AGDRVIV+GLQ IRPG
Sbjct: 327 VVQLREIEASKAIGDQWVVTSGLQAGDRVIVSGLQRIRPG 366