Pairwise Alignments

Query, 1089 a.a., RND efflux system, inner membrane transporter from Variovorax sp. SCN45

Subject, 1059 a.a., transporter from Pseudomonas simiae WCS417

 Score = 1382 bits (3576), Expect = 0.0
 Identities = 694/1039 (66%), Positives = 842/1039 (81%), Gaps = 1/1039 (0%)

Query: 1    MNLSKFFIDRPIFAGVLSLLMLIAGLIALRGLPISEYPEVAPPSVVVRAQYPGANPKVIA 60
            MN SKFFI RPIFA VLSLL+LIAG I+L  LPISEYPEV PP+VVVRA +PGANPKVI 
Sbjct: 1    MNFSKFFISRPIFAAVLSLLILIAGAISLFQLPISEYPEVVPPTVVVRANFPGANPKVIG 60

Query: 61   ETVATPLEEQINGVEGMLYMGSQATTDGVLTLTVTFRLGTDPDKAQQLVQNRVSQAEPRL 120
            ETVA PLE+ I GVE MLYM SQ+T DG LTLT+TF LGTD D AQ  VQNRV++ +P+L
Sbjct: 61   ETVAAPLEQAITGVENMLYMSSQSTADGKLTLTITFALGTDLDNAQVQVQNRVTRTQPKL 120

Query: 121  PEEVRRLGITTVKSAPDLTMVVHLVSPNNRYDINYLRNYAVLNVKDPLARIEGVGQVQIF 180
            PEEV R+GIT  K++PDLTMVVHL SP+ RYD+ YL NYA+LNVKD LAR+ GVG VQ+F
Sbjct: 121  PEEVTRIGITVDKASPDLTMVVHLTSPDQRYDMLYLSNYALLNVKDELARLGGVGDVQLF 180

Query: 181  GGGDYSMRVWLDPQKVAQRGLSASDVVAAIRGQNVQAAAGVVGASPGLSGVDMQLSINAQ 240
            G GDYS+RVWLDP K A R L+A+DVV AIR QN Q AAG +GA P  +    QLS+N Q
Sbjct: 181  GMGDYSLRVWLDPNKTASRNLTATDVVTAIREQNRQVAAGALGAQPAPTATAFQLSVNTQ 240

Query: 241  GRLQSEEEFGDIIVKSGTDGAVTRLRDIGRLEMGAADYSLRSLLNNDPAVGMGVFQAPGS 300
            GRL +EEEF +II++SG +G +TRL+DI R+E+G++ Y+LRSLLNN PAV + +FQ PGS
Sbjct: 241  GRLVTEEEFENIIIRSGDNGEITRLKDIARVELGSSQYALRSLLNNQPAVAIPIFQRPGS 300

Query: 301  NALDISANVRKTMEELNKNMPEGLEYRIAYDPTQFVRASIESVIHTLLEAIMLVVLVVIL 360
            NA++IS  VR  MEEL K+ P+G++Y I YDPT FVR SIE+V+HTL EA++LVVLVVIL
Sbjct: 301  NAIEISNEVRGKMEELKKSFPQGMDYSIVYDPTIFVRGSIEAVVHTLFEALILVVLVVIL 360

Query: 361  FLQTWRASIIPLLAVPVSVIGTFAVLHVLGFSINALSLFGLVLAIGIVVDDAIVVVENVE 420
            FLQTWRASIIPL+AVPVS+IGTFAV+H+ GFS+NALSLFGLVLAIGIVVDDAIVVVENVE
Sbjct: 361  FLQTWRASIIPLVAVPVSLIGTFAVMHLFGFSLNALSLFGLVLAIGIVVDDAIVVVENVE 420

Query: 421  RNIEAGLTPREATYRAMREVSGPIIAIALVLVAVFVPLAFISGLTGQFYRQFAVTIAIST 480
            RNIE GL P  AT +AM EV+GPIIA ALVL AVF+P AFISGLTGQFY+QFA+TIAIST
Sbjct: 421  RNIELGLDPFPATEKAMSEVTGPIIATALVLCAVFIPAAFISGLTGQFYKQFALTIAIST 480

Query: 481  VISAINSLTLSPALAALLLRGHDQPKDALTRGMDRAF-GWLFRGFNKLFHRGSEAYSGGV 539
            VISA NSLTLSPALAA+LLR HD PKD  ++ +D+ F GWLFR FN+ F + S  Y G V
Sbjct: 481  VISAFNSLTLSPALAAVLLRSHDAPKDRFSKILDKIFGGWLFRPFNRFFEKASHGYVGTV 540

Query: 540  KNVISRKALMLAIYVALIAVTFGLFKAVPGGFVPAQDKQYLIGFAQLPDGATLDRTDEVI 599
            + VI    + L +Y  L+ +T+  F   P GFVPAQDKQYL+ FAQLPD A+LDRT++VI
Sbjct: 541  RRVIRGSGIALFLYAGLMVLTWFGFAHTPTGFVPAQDKQYLVAFAQLPDAASLDRTEDVI 600

Query: 600  QRMGEIMKKNPNVEDAIAFPGLSINGFTNSSNSGIVFATLKPFDQRKRPDQSGGAVAGQL 659
            +RM +I  K P VE A+AFPGLSINGFTNS NSGIVF TLKPFD+RK P  S GA+AG L
Sbjct: 601  KRMSDIALKQPGVEAAVAFPGLSINGFTNSPNSGIVFVTLKPFDERKDPSMSAGAIAGAL 660

Query: 660  NGAFAGIQDAFIVMFPPPPVAGLGTTGGFKLQLEDRASVGYDQMDAAVKAFMAKAQQAPE 719
            NG ++ IQ+A++ +FPPPPV GLGT GGF+LQ+EDR ++GYD++   V+  + K++  PE
Sbjct: 661  NGKYSDIQEAYMAIFPPPPVQGLGTIGGFRLQIEDRGNLGYDELYKEVQNIITKSRTTPE 720

Query: 720  LAGMFTSWQVNVPQLYADIDRTKARQLGVPVTDIFDTMQIYLGSLYANDFNKFGRTYSVR 779
            L G+FTS+ VNVPQ+ A IDR KA+  GV ++DIFDT+QIYLGSLYANDFN+FGRTY V 
Sbjct: 721  LFGLFTSYTVNVPQVDAAIDREKAKTHGVAISDIFDTLQIYLGSLYANDFNRFGRTYQVN 780

Query: 780  VQADAPYRARAEDVGLLKVRSTSGEMVPLSALMKVNSTFGPERAMRYNGYLAADINGGPA 839
            VQA+  +R   + +G LKVR+  GEM+PL+  +KV+ T GP+R M YNG++ A+ING  A
Sbjct: 781  VQAEQQFRLDEDQIGQLKVRNNKGEMIPLATFIKVSDTSGPDRVMHYNGFITAEINGNAA 840

Query: 840  PGYSSGQAQDAITKIAAETLPKGVSFEWTELTYQEILAGNSAFLVFPLAILLVFLVLAAQ 899
            PGYSSGQA+ AI K+  E LP G+++EWT+LTYQ+IL+GN+A  VFPL +LL FLVLAAQ
Sbjct: 841  PGYSSGQAEAAIEKLLKEELPNGMTYEWTDLTYQQILSGNTALFVFPLCVLLAFLVLAAQ 900

Query: 900  YESLTLPIAIILIVPMGIMAAMAGVWISGGDNNVFTQIGLIVLVGLSAKNAILIVEFARE 959
            YES +LP+A+ILIVPM +++A+ GV ISGGDNN+FTQIGLIVLVGL+ KNAILIVEFA++
Sbjct: 901  YESWSLPLAVILIVPMTLLSAITGVIISGGDNNIFTQIGLIVLVGLACKNAILIVEFAKD 960

Query: 960  LEFAGRTPVQAAIEASRLRLRPILMTSLAFVMGVLPLVLSTGAGSEMRKAMGVAVFAGMI 1019
             +  G  P+ A +EA RLRLRPILMTS AF+MGV+PLVLS+GAG+EMR AMGVAVF+GMI
Sbjct: 961  KQAEGLDPLAAVLEACRLRLRPILMTSFAFIMGVVPLVLSSGAGAEMRHAMGVAVFSGMI 1020

Query: 1020 GVTAFGLFLTPVFYVLLRR 1038
            GVT FGL LTPVFYVL+RR
Sbjct: 1021 GVTFFGLLLTPVFYVLIRR 1039