Pairwise Alignments

Query, 1089 a.a., RND efflux system, inner membrane transporter from Variovorax sp. SCN45

Subject, 1050 a.a., Probable efflux pump membrane transporter TtgB from Pseudomonas putida KT2440

 Score =  805 bits (2079), Expect = 0.0
 Identities = 432/1045 (41%), Positives = 654/1045 (62%), Gaps = 16/1045 (1%)

Query: 3    LSKFFIDRPIFAGVLSLLMLIAGLIALRGLPISEYPEVAPPSVVVRAQYPGANPKVIAET 62
            +SKFFIDRPIFA V++L++++ G +++  LPI++YP +APP++ +   YPGA+ + + +T
Sbjct: 1    MSKFFIDRPIFAWVIALVIMLVGALSILKLPINQYPSIAPPAIAIAVTYPGASAQTVQDT 60

Query: 63   VATPLEEQINGVEGMLYMGSQATTDGVLTLTVTFRLGTDPDKAQQLVQNRVSQAEPRLPE 122
            V   +E+Q+NG++ + Y+ S++ +DG +T+T TF  GT+PD AQ  VQN+++ A P LP+
Sbjct: 61   VVQVIEQQLNGIDNLRYVSSESNSDGSMTITATFEQGTNPDTAQVQVQNKLNLATPLLPQ 120

Query: 123  EVRRLGITTVKSAPDLTMVVHLVSPNNRYDINYLRNYAVLNVKDPLARIEGVGQVQIFGG 182
            EV++ GI   K+  +  +V+ LVS +     + L NY V N++DP++R  GVG  Q+FG 
Sbjct: 121  EVQQQGIRVTKAVKNFLLVIGLVSEDGSMTKDDLANYIVSNMQDPISRTAGVGDFQVFGA 180

Query: 183  GDYSMRVWLDPQKVAQRGLSASDVVAAIRGQNVQAAAGVVGASPGLSGVDMQLSINAQGR 242
              Y+MR+WLDP K+ +  L+  DV  A+  QNVQ ++G +G  P L G  +  +I  + R
Sbjct: 181  -QYAMRIWLDPAKLNKFQLTPVDVKTAVAAQNVQVSSGQLGGLPALPGTQLNATIIGKTR 239

Query: 243  LQSEEEFGDIIVKSGTDGAVTRLRDIGRLEMGAADYSLRSLLNNDPAVGMGVFQAPGSNA 302
            LQ+ E+F  I++K   DG+  RL D+ ++ +G  +Y++ +  N  PA G+ V  A G+NA
Sbjct: 240  LQTAEQFESILLKVNKDGSQVRLGDVAQVGLGGENYAVSAQFNGKPASGLAVKLATGANA 299

Query: 303  LDISANVRKTMEELNKNMPEGLEYRIAYDPTQFVRASIESVIHTLLEAIMLVVLVVILFL 362
            LD +  +R+T++ L    P G++    YD T  V  SI  VIHTL+EA++LV LV+ LFL
Sbjct: 300  LDTAKALRETIKGLEPFFPPGVKAVFPYDTTPVVTESISGVIHTLIEAVVLVFLVMYLFL 359

Query: 363  QTWRASIIPLLAVPVSVIGTFAVLHVLGFSINALSLFGLVLAIGIVVDDAIVVVENVERN 422
            Q +RA+II  + VPV ++GTF +L   GFSIN L++F +VLAIG++VDDAIVVVENVER 
Sbjct: 360  QNFRATIITTMTVPVVLLGTFGILAAAGFSINTLTMFAMVLAIGLLVDDAIVVVENVERV 419

Query: 423  I-EAGLTPREATYRAMREVSGPIIAIALVLVAVFVPLAFISGLTGQFYRQFAVTIAISTV 481
            + E GL P+EAT R+M ++ G ++ IALVL AV +P+AF  G TG  YRQF++TI  +  
Sbjct: 420  MSEEGLPPKEATKRSMEQIQGALVGIALVLSAVLLPMAFFGGSTGVIYRQFSITIVSAMG 479

Query: 482  ISAINSLTLSPALAALLLRGHDQPKDALTRGMDRAFGWLFRGFNKLFHRGSEAYSGGVKN 541
            +S + +L  +PAL A +L+   + +    +G    FGW    FN+ F R    Y   V  
Sbjct: 480  LSVLVALIFTPALCATMLKPLKKGEHHTAKG--GFFGW----FNRNFDRSVNGYERSVGA 533

Query: 542  VISRKALMLAIYVALIAVTFGLFKAVPGGFVPAQDKQYLIGFAQLPDGATLDRTDEVIQR 601
            ++  K   L  Y  ++     LF  +P  F+P +D+  L    Q P G++ +RT  V+ +
Sbjct: 534  ILRNKVPFLLAYALIVVGMIWLFARIPTAFLPEEDQGVLFAQVQTPAGSSAERTQVVVDQ 593

Query: 602  MGEIMKKNPNVEDAIAFPGLSINGFT---NSSNSGIVFATLKPFDQRKRPDQSGGAVAGQ 658
            M E + K+     +  F   ++NGF       +SG+ F  LKP+D+R + + S  A+A +
Sbjct: 594  MREYLLKDEADTVSSVF---TVNGFNFAGRGQSSGMAFIMLKPWDERSK-ENSVFALAQR 649

Query: 659  LNGAFAGIQDAFIVMFPPPPVAGLGTTGGFKLQLEDRASVGYDQMDAAVKAFMAKAQQAP 718
                F   +DA +  F PP V  LG   GF + L+DR  VG++++  A   F+AKA Q+ 
Sbjct: 650  AQQHFFTFRDAMVFAFAPPAVLELGNATGFDVFLQDRGGVGHEKLMEARNQFLAKAAQSK 709

Query: 719  ELAGMFTSWQVNVPQLYADIDRTKARQLGVPVTDIFDTMQIYLGSLYANDFNKFGRTYSV 778
             L+ +  +   + PQ    ID  +A  LGV + DI +T+ I LG+ Y NDF   GR   V
Sbjct: 710  ILSAVRPNGLNDEPQYQLTIDDERASALGVTIADINNTLSIALGASYVNDFIDRGRVKKV 769

Query: 779  RVQADAPYRARAEDVGLLKVRSTSGEMVPLSALMKVNSTFGPERAMRYNGYLAADINGGP 838
             +Q +   R   ED+    VR+ +GEMVP S+  K   T+G  +  RYNG  A +I G P
Sbjct: 770  YIQGEPSARMSPEDLQKWYVRNGAGEMVPFSSFAKGEWTYGSPKLSRYNGVEAMEILGAP 829

Query: 839  APGYSSGQAQDAITKIAAETLPKGVSFEWTELTYQEILAGNSAFLVFPLAILLVFLVLAA 898
            APGYS+G+A   + +IA E LP G+ F WT ++Y+E L+G+    +F L++L VFL LAA
Sbjct: 830  APGYSTGEAMAEVERIAGE-LPSGIGFSWTGMSYEEKLSGSQMPALFALSVLFVFLCLAA 888

Query: 899  QYESLTLPIAIILIVPMGIMAAMAGVWISGGDNNVFTQIGLIVLVGLSAKNAILIVEFAR 958
             YES ++PIA++L+VP+GI+ A+    + G  N+V+  +GL+  +GL+AKNAILIVEFA+
Sbjct: 889  LYESWSIPIAVVLVVPLGIIGALIATSLRGLSNDVYFLVGLLTTIGLAAKNAILIVEFAK 948

Query: 959  ELEFAGRTPVQAAIEASRLRLRPILMTSLAFVMGVLPLVLSTGAGSEMRKAMGVAVFAGM 1018
            EL   GR+   AAIEA R+RLRPI+MTSLAF++GV+PL +++GAG+  + A+G  V  GM
Sbjct: 949  ELHEQGRSLYDAAIEACRMRLRPIIMTSLAFILGVVPLTIASGAGAGSQHAIGTGVIGGM 1008

Query: 1019 IGVTAFGLFLTPVFYVLLRRLAGNR 1043
            I  T   +F  P+F+V +  L G++
Sbjct: 1009 ISATVLAIFWVPLFFVAVSSLFGSK 1033