Pairwise Alignments

Query, 1089 a.a., RND efflux system, inner membrane transporter from Variovorax sp. SCN45

Subject, 1059 a.a., multidrug efflux RND transporter permease subunit from Magnetospirillum magneticum AMB-1

 Score = 1081 bits (2795), Expect = 0.0
 Identities = 552/1039 (53%), Positives = 725/1039 (69%)

Query: 1    MNLSKFFIDRPIFAGVLSLLMLIAGLIALRGLPISEYPEVAPPSVVVRAQYPGANPKVIA 60
            M LS FFIDRPIFA V+S+L+ I G I    LP+++YPE+APP++VV A YPGA+ +V+A
Sbjct: 1    MRLSHFFIDRPIFATVVSVLITIIGAITYFALPVAQYPEIAPPTIVVSASYPGASAQVVA 60

Query: 61   ETVATPLEEQINGVEGMLYMGSQATTDGVLTLTVTFRLGTDPDKAQQLVQNRVSQAEPRL 120
            +TVATPLE+QINGVE MLYM SQAT DG L LTVTF LGT+ D AQ LVQNRV+ A  RL
Sbjct: 61   DTVATPLEQQINGVENMLYMNSQATGDGNLKLTVTFALGTNLDTAQVLVQNRVAIATARL 120

Query: 121  PEEVRRLGITTVKSAPDLTMVVHLVSPNNRYDINYLRNYAVLNVKDPLARIEGVGQVQIF 180
            P++V+R+GIT  K++PD+ MVVH+ SP+   +  YL N+A L + D LAR++GVG+V+IF
Sbjct: 121  PDDVKRIGITVAKNSPDMLMVVHVNSPDGSREQLYLSNFATLQMIDVLARLDGVGEVRIF 180

Query: 181  GGGDYSMRVWLDPQKVAQRGLSASDVVAAIRGQNVQAAAGVVGASPGLSGVDMQLSINAQ 240
            G  DY+MRVW+DP K A R L+A +VV A++ QNVQ AAGV+   P       QLS+  Q
Sbjct: 181  GARDYAMRVWIDPDKAAARNLTAGEVVKALQAQNVQIAAGVLDQPPVPKQGAFQLSVQTQ 240

Query: 241  GRLQSEEEFGDIIVKSGTDGAVTRLRDIGRLEMGAADYSLRSLLNNDPAVGMGVFQAPGS 300
            GRL    +FG++IVK+ + G V RL+D+ R+E+GA DYS+   LN + AV + VFQ PGS
Sbjct: 241  GRLLDPAQFGEVIVKADSSGRVVRLKDVARIELGAQDYSVNGYLNGNNAVPVAVFQRPGS 300

Query: 301  NALDISANVRKTMEELNKNMPEGLEYRIAYDPTQFVRASIESVIHTLLEAIMLVVLVVIL 360
            NAL  +  V   +EEL++  P G+ Y IAY+PTQF+  S+++VI T+ EA++LVV VVIL
Sbjct: 301  NALATAERVIAKVEELSRTFPSGVSYTIAYNPTQFIAQSVKAVIKTIFEAVILVVFVVIL 360

Query: 361  FLQTWRASIIPLLAVPVSVIGTFAVLHVLGFSINALSLFGLVLAIGIVVDDAIVVVENVE 420
            FLQTWRAS+IPL A+PVS++GTFAVL  +G+S+N LSLFGLVLA+GIVVDDAIVVVENVE
Sbjct: 361  FLQTWRASLIPLAAIPVSLVGTFAVLGAMGYSLNNLSLFGLVLAVGIVVDDAIVVVENVE 420

Query: 421  RNIEAGLTPREATYRAMREVSGPIIAIALVLVAVFVPLAFISGLTGQFYRQFAVTIAIST 480
            RN++ G+  R A ++ M EV   +I+IALVL AVF+P AFI G++GQF+RQFAVTIA ST
Sbjct: 421  RNMKDGMNARSAAHQTMDEVGSALISIALVLCAVFIPAAFIPGISGQFFRQFAVTIAAST 480

Query: 481  VISAINSLTLSPALAALLLRGHDQPKDALTRGMDRAFGWLFRGFNKLFHRGSEAYSGGVK 540
            VIS I SLTLSPAL ALL RGH         G  R     F  FN  F R +  Y G  +
Sbjct: 481  VISLIVSLTLSPALCALLFRGHGPLDHHEETGWRRQVARFFTWFNHNFDRLAGGYGGMTR 540

Query: 541  NVISRKALMLAIYVALIAVTFGLFKAVPGGFVPAQDKQYLIGFAQLPDGATLDRTDEVIQ 600
            +V+ +  +ML +Y  LI      F   P GF+P  D+ YLI   QLP GA+L RTD  ++
Sbjct: 541  SVVRKSGIMLLLYAGLIGAAGVEFVKTPKGFIPEMDQGYLITVVQLPPGASLSRTDAAVK 600

Query: 601  RMGEIMKKNPNVEDAIAFPGLSINGFTNSSNSGIVFATLKPFDQRKRPDQSGGAVAGQLN 660
            R+  IM + P V   +AF GL    FTN+SN   +F  LKPF++R     S   +   L 
Sbjct: 601  RVAAIMAETPGVAHTLAFAGLDGATFTNASNGAAIFTPLKPFEERYAQGLSANVIMADLR 660

Query: 661  GAFAGIQDAFIVMFPPPPVAGLGTTGGFKLQLEDRASVGYDQMDAAVKAFMAKAQQAPEL 720
               + +QDAFI+   PPPV G+GT GGFK+ L+D+   G   ++       A+A + P L
Sbjct: 661  KRLSTVQDAFIITIAPPPVRGIGTAGGFKMMLQDKGGHGSKALEDVALDMAAEANKIPGL 720

Query: 721  AGMFTSWQVNVPQLYADIDRTKARQLGVPVTDIFDTMQIYLGSLYANDFNKFGRTYSVRV 780
             G+FT +    P +YADIDR +A+ LGVP   + + +Q+YLGS + N+FN  GRT+ V  
Sbjct: 721  QGIFTLFNTRTPNVYADIDRVRAQMLGVPTDRVSEALQVYLGSAFVNEFNYLGRTFRVTA 780

Query: 781  QADAPYRARAEDVGLLKVRSTSGEMVPLSALMKVNSTFGPERAMRYNGYLAADINGGPAP 840
            QADAP+R   ED+  +KVR+  G+MVP+ A+       GP R  RYN + AA++ G  AP
Sbjct: 781  QADAPFRNEVEDIANIKVRNDKGQMVPIGAVSSFRFDTGPYRVPRYNLFPAAEVQGSAAP 840

Query: 841  GYSSGQAQDAITKIAAETLPKGVSFEWTELTYQEILAGNSAFLVFPLAILLVFLVLAAQY 900
            GY+SG A + +  +AAE LP+G  FEWTEL  QE+LAGN+   VF  ++L VFL+LAAQY
Sbjct: 841  GYASGYALEQMRALAAERLPEGFGFEWTELALQELLAGNNGLFVFAASVLFVFLLLAAQY 900

Query: 901  ESLTLPIAIILIVPMGIMAAMAGVWISGGDNNVFTQIGLIVLVGLSAKNAILIVEFAREL 960
            ES +LP A++LIVPM ++AA+ G+ I G   N+  QIG IVL+GL+AKNAILIVEFAR+ 
Sbjct: 901  ESWSLPAAVVLIVPMCLLAAVTGLIIRGLPINILAQIGFIVLIGLAAKNAILIVEFARQA 960

Query: 961  EFAGRTPVQAAIEASRLRLRPILMTSLAFVMGVLPLVLSTGAGSEMRKAMGVAVFAGMIG 1020
            E  G   ++AA+ A R RLRPILMTSLAF++GVLPLV  TGAG+EMR+++G AVF GM+G
Sbjct: 961  ESEGMDRIEAAVHAGRTRLRPILMTSLAFILGVLPLVAGTGAGAEMRQSLGTAVFYGMLG 1020

Query: 1021 VTAFGLFLTPVFYVLLRRL 1039
            VTAFGL  TP+FYV++R++
Sbjct: 1021 VTAFGLVFTPIFYVVIRKM 1039