Pairwise Alignments

Query, 323 a.a., Transcriptional regulator, AraC family from Variovorax sp. SCN45

Subject, 324 a.a., Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain from Variovorax sp. SCN45

 Score =  206 bits (525), Expect = 5e-58
 Identities = 128/319 (40%), Positives = 183/319 (57%), Gaps = 11/319 (3%)

Query: 2   SRSVAFLLVPEFQLFDMAGPLSVFQVAAEIGRGRRGPAYEVAVLSERGGRVACSAGLEMH 61
           ++++A L +P  QL D++GPL VF   AE     +  AY + V++ + G V  S+G+ + 
Sbjct: 4   TKTIAILAMPGVQLLDVSGPLDVF---AEANLQAKAQAYRLLVVASKRGPVRSSSGVRLM 60

Query: 62  TRAW----RDSQAGTVIVPGGVGARKPGAATPALMQHLRGALAAKRRVASVCTGAFLLAE 117
             A           T++V G   A    A+   +   L+      RR  SVC+GAF+LA+
Sbjct: 61  PDATIGDAMHEPIHTLLVAGSPHAAD-AASDANVSAWLKQQTPKLRRFGSVCSGAFVLAQ 119

Query: 118 AGLLDGRHATTHWRQAALLQRNYPAITVDADRIFVRDGNVWSSAGIAAGIDLALAMVEAD 177
           AGLL+GR  TTHW  A  L R+YP++TVDAD I VRDG + ++AG+ AG+DL+LA+VE D
Sbjct: 120 AGLLNGRRVTTHWAVAEQLARDYPSVTVDADAIHVRDGRLRTAAGVTAGLDLSLALVEED 179

Query: 178 LGADTAGAVAREMVVYHRRTGGQSQFSALQDLAPQSGR--MRAVLAYIGENLTADLDIER 235
           LG D A  VA ++V++ +R GGQ QFS   + AP +GR  ++ V  +I  N   D  +  
Sbjct: 180 LGRDIAMKVAAQLVMFFKRPGGQMQFSRKGEAAP-TGRSALQEVQRWIAANPAQDHGVAN 238

Query: 236 LAEVACVSPRQFMRAFKAETGQTPAKAVERIRAEVARTHIEGGDSSIEAVARLTGFEDTE 295
           LA    +S R F R F+ E G TPA  VE +R   AR  +E GD++ + VA   GF D +
Sbjct: 239 LAARMGLSERHFARLFRQEVGVTPAAWVEDVRVTAARRLLEAGDAAPKQVAFQCGFADAD 298

Query: 296 RMRRAFVRVYGQPPQALRR 314
            +RRAF R  G  P   R+
Sbjct: 299 TLRRAFQRHVGITPAEYRK 317