Pairwise Alignments

Query, 420 a.a., hypothetical protein from Variovorax sp. SCN45

Subject, 454 a.a., D-galacturonate transporter (MFS superfamily) (from data) from Pseudomonas simiae WCS417

 Score = 54.7 bits (130), Expect = 6e-12
 Identities = 48/188 (25%), Positives = 79/188 (42%), Gaps = 7/188 (3%)

Query: 20  LVILAFGHTLSNLLRTLPAMATDVMSLDMGTTAALLGLLTGVYHLFFALGQLPAGVMLDR 79
           L++L    T++   R   A+A   +  D+G  A  LG +   +   +  GQ+P G +LDR
Sbjct: 14  LLMLFLVTTINYADRATIAIAGSSLQKDLGIDAVTLGYIFSAFGWAYVAGQIPGGWLLDR 73

Query: 80  LGVRTV-SLSLFAMTALGCVAA-----ALAQGPVGFFAAQALLGLGCCGMLLCPFALAAR 133
            G + V +LS+F  +    +        ++   V  F  + ++GL           + A 
Sbjct: 74  FGSKKVYALSIFTWSLFTVLQGYVGEFGVSTAVVALFMLRFMVGLAEAPSFPGNARIVAA 133

Query: 134 ALPPARFAMWSGLILSIGNCGMLLSATPMAWLIERHGWRASFWLAGAMAIGIGVLVALAV 193
             P A     S +  S      +L A  M W++   GW+  F + G + I I  L+ L V
Sbjct: 134 WFPTAERGTASAIFNSAQYFATVLFAPLMGWIVYSFGWQHVFIVMGVIGI-IFSLIWLKV 192

Query: 194 PRHPRTAP 201
              PR  P
Sbjct: 193 IHSPRQHP 200