Pairwise Alignments

Query, 820 a.a., TonB-dependent siderophore receptor from Variovorax sp. SCN45

Subject, 833 a.a., ligand-gated channel from Pseudomonas simiae WCS417

 Score =  208 bits (530), Expect = 9e-58
 Identities = 225/861 (26%), Positives = 349/861 (40%), Gaps = 89/861 (10%)

Query: 14  LAPLALAAALAAGLCGPAQAQASAAFHTSRDL---AIGAQAMGPALNELARQAGLQLMFP 70
           L PLAL+ A+A         Q++ A  +S  +   +I A  +  ALN LA QAGL L F 
Sbjct: 8   LHPLALSVAMAFAAVPLLTVQSTHAEESSSAVGRFSIPAGDLSQALNSLAEQAGLVLAFD 67

Query: 71  PALVAGKTAPAVSGRLTPRQAVDRLLAGSGLAA-ELNGDAVVVKPAPPAAAGDHSTLPAV 129
            +L  GK +  +SG+     A+ +LL+GSGL A +L+ D   ++  P    G    L A 
Sbjct: 68  ASLTRGKRSQGLSGQYDTDVALTQLLSGSGLQALKLSADRYRLESIPDN--GGAMELQAT 125

Query: 130 TVSAEGPSDGITESTGSYTTRATGAGTRMALSLRETPQSVSVVGRQQIEDQNLTTLVDVL 189
           T+S    ++  T     Y    + +GT+   +L ETPQS+S+V + Q+  QN  +L  +L
Sbjct: 126 TISGAYQAESPTGPVSGYVATRSLSGTKTDTALIETPQSISIVTKDQMRAQNAESLNQIL 185

Query: 190 R-------QTPGIVADRLDERVSFSSRGFALGTMIDGVPTLSYNTVAGESSMASTSIYDR 242
           R       +T G  A RLD+    + RGF+  T +DG+   S      +         +R
Sbjct: 186 RYSAAVIPETRGATASRLDQ---LTIRGFSPATYLDGLRMPSSRDALPQKDAFDL---ER 239

Query: 243 VEVIRGAAGLLNGAGSPGGSVNLVRKRPTAEFSGHVTAGFGSWNRYTSEVDVGGSLNAAG 302
           VEV+RG A +L G G+P G +N+V KRP       V   +G++N+  +  D+ G ++  G
Sbjct: 240 VEVLRGPASVLYGQGTPSGVINMVSKRPLDTPFHEVGVEYGTFNKKRTTFDLSGPMDDQG 299

Query: 303 TVRGRVVASHTAGDSFIENKKQREDVFYGIAEMDVAPGTLLTAGYEYQKTGIDGANFGQA 362
               RV       D  +E+ + R               T LT    +QK    GA++G  
Sbjct: 300 VYSYRVAGLFDDADGQVEHTETRRQSLSSAFTWRPDDATSLTLLGHFQKDP-KGASYGSV 358

Query: 363 PLFYRNGLATQLPRS-----YNSSTPWSTWDMTTQRLFVNLDHRFGNGWRLKADAAYAKN 417
           P  + + L +   RS     Y+    +   D     +    +H F + W ++ +A Y ++
Sbjct: 359 PA-WGSVLHSPTGRSIDVDFYDGEKNFEKSDREYYSIGWAFEHHFDDVWTVRQNARYLRS 417

Query: 418 D---RERFSGDLWLYPANISPSANLGLVQLANNPANSTNKSLDVYATGPFDLFGRTHEAS 474
           +   R  +S  L      I  S     V L          +LD      FD     H   
Sbjct: 418 EGQYRSLYSNYLMADYRTIRRSTIASDVDL-------DAYTLDNQVQAKFDTGPLQHTLL 470

Query: 475 VGFNINRYD----YGYGNWGAVPNAFDRRTVSIFSLGSIAQPAFNYPLNHFDGT--TEEK 528
           +G +          G G + A P      T+ IF+   +   A   P    DGT  +E+ 
Sbjct: 471 MGLDYQNTSTDTLSGSGVYTAGP------TLDIFN--PVYGAAVPVPAYTTDGTSRSEQT 522

Query: 529 GLYAAARFKPLDALSVLVGGRVSWYENQSSQRLWTNGTRGALVTNKPVKEDAVFTPYVGV 588
           G+Y   + K  D   +L+GGR  W    +S +  ++G +     +K   +   FT  +G+
Sbjct: 523 GVYLQEQMK-WDKWVLLLGGRYDWASTDNSTQTLSSGAK-----SKSSLDSKAFTGRIGL 576

Query: 589 VYDLSKEYSLYASYTDIFQPNTVRDASNQVLDPKRGTNSELGIKGEHWGGRLNTSFAVFR 648
           VY      + YASY + F P +       V  P  G   E+GIK +  G     + A+F 
Sbjct: 577 VYLFDNGLAPYASYAESFNPQSGTGYGGSVFKPTEGKQYEIGIKYQPPGSNSFITAAIFD 636

Query: 649 TQEDNLAVLDSGAPLLADGTAPYRAVKG-ARSKGFEFTVSGELARGWQVMGGYTYHAKRD 707
            ++ N+   D   P    GT   ++  G  +S+GFE      L     +   Y Y   R 
Sbjct: 637 LRQTNVLTTDPD-PTHLCGTGRCQSQDGEVQSRGFELEGKASLNDNLDITAAYAYLDNRI 695

Query: 708 NK-----------DVLLNP--------TY--PRRLFRVATSYR-FPGDWSALTIGGSVSY 745
           +K           D+ + P        TY  PR        Y    G      +G    Y
Sbjct: 696 SKSNNTVRYAPISDIGVGPAIAAEGTTTYGVPRHTASAWADYTVHDGKLKGFGVGAGARY 755

Query: 746 QSDIYYDESYGTGRATQGGLTLISLMARYE------FSKQLSATLNIENLSDKRYYTGLG 799
               + D +         G TL      Y+          L   LN  NL++K Y     
Sbjct: 756 VGSSWGDTA---NTLKVPGYTLFDAAVHYDIPNIARLKDNLRLALNATNLANKEYVASCY 812

Query: 800 GYNGYTYGAPRNAWLKATYKF 820
            Y+   YG+ R     ATY++
Sbjct: 813 SYSWCWYGSQRTVQASATYQW 833