Pairwise Alignments

Query, 183 a.a., RNA polymerase ECF-type sigma factor from Variovorax sp. SCN45

Subject, 160 a.a., RNA polymerase sigma factor from Pseudomonas simiae WCS417

 Score =  109 bits (273), Expect = 2e-29
 Identities = 63/161 (39%), Positives = 91/161 (56%), Gaps = 6/161 (3%)

Query: 1   LVTRYYRELLNFCARALRNRDAAADIVQESYARVLAIERSS-VPIGDPRALLYQTARHVM 59
           ++  YYREL+ F    L NR  A D+V ++Y RVL  ERSS  PI  PRA LY+TA +++
Sbjct: 1   MLENYYRELVCFLNAKLGNRQVAEDVVHDAYVRVL--ERSSDTPIEQPRAFLYRTALNLV 58

Query: 60  VDQHRRNLLREHDDLAALSESEQPVLPAHLQPDAILASAQAVQAYVATIEALPPRCREAF 119
           +D HRRN LR+ + L  L   E+    A   P       Q ++     +  LPP CR++F
Sbjct: 59  IDGHRRNALRQVEPLDVLDAEERF---ASSSPHTHHDHGQRLELLERALAELPPACRDSF 115

Query: 120 VLHVFDGLSHAEIAARMGASVSMIEKHVARGRLACRACERQ 160
           +L   +GL+H +IA R+  S +M+EKH+      CR   R+
Sbjct: 116 LLRKLEGLTHLQIAERLSISRAMVEKHIVNAMKHCRVRMRE 156