Pairwise Alignments

Query, 183 a.a., RNA polymerase ECF-type sigma factor from Variovorax sp. SCN45

Subject, 374 a.a., putative RNA polymerase sigma-70 factor, ECF subfamily/transmembrane sensor protein from Pseudomonas putida KT2440

 Score = 84.7 bits (208), Expect = 2e-21
 Identities = 48/158 (30%), Positives = 86/158 (54%), Gaps = 6/158 (3%)

Query: 5   YYRELLNFCARALRNRDAAADIVQESYARVLAIERSSVPIGDPRALLYQTARHVMVDQHR 64
           +Y +LL F  R + +R  AAD+ QE+Y +++ I+  +VP+   R+ +++ A ++ +D  R
Sbjct: 16  HYDDLLQFLTRRMSDRQRAADVAQETYLKLVNIDEQAVPVLHARSFIFRVAGNLAIDALR 75

Query: 65  R--NLLREHDDLAALSESEQPVLPAHLQPDAILASAQAVQAYVATIEALPPRCREAFVLH 122
           R   +   HDD     E   P  PA   P+A L + + +Q     +  LP   R+A +L+
Sbjct: 76  REQRIAASHDDSDGACEVACPA-PA---PEAALLARERLQILDQALLQLPDNARQALLLN 131

Query: 123 VFDGLSHAEIAARMGASVSMIEKHVARGRLACRACERQ 160
             +GL+  ++A R+G S SM+ K++ +    CR   +Q
Sbjct: 132 RVEGLTQKQVAQRLGVSESMVAKYIGQALRHCRGRLKQ 169