Pairwise Alignments

Query, 183 a.a., RNA polymerase ECF-type sigma factor from Variovorax sp. SCN45

Subject, 161 a.a., ECF subfamily RNA polymerase sigma-24 factor from Pseudomonas putida KT2440

 Score = 82.4 bits (202), Expect = 4e-21
 Identities = 49/145 (33%), Positives = 75/145 (51%), Gaps = 6/145 (4%)

Query: 5   YYRELLNFCARALRNRDAAADIVQESYARVLAIERSSVPIGDPRALLYQTARHVMVDQHR 64
           +Y EL+    R LR+R  A D+  +++ RVL   R  V    PRA L+Q AR++ VD  R
Sbjct: 10  HYHELIGTWTRKLRSRQQAEDLTHDAFVRVLETPREQVE--QPRAYLHQAARNIAVDGFR 67

Query: 65  RNLLREHDDLAALSESEQPVLPAHLQPDAILASAQAVQAYVATIEALPPRCREAFVLHVF 124
           R   R+  +  A  E           P+A + + +   +    +  LP  CR+ F+    
Sbjct: 68  REDRRQALEREAFEEGAT----GSGDPEAYVHALELADSVERALAELPLNCRQVFIWQKL 123

Query: 125 DGLSHAEIAARMGASVSMIEKHVAR 149
           +GL+ AEIA RMG S +M+EK++ R
Sbjct: 124 EGLTQAEIAERMGLSKNMVEKYMIR 148