Pairwise Alignments

Query, 183 a.a., RNA polymerase ECF-type sigma factor from Variovorax sp. SCN45

Subject, 171 a.a., RNA polymerase sigma-70 factor, ECF subfamily from Pseudomonas putida KT2440

 Score = 73.6 bits (179), Expect = 2e-18
 Identities = 46/134 (34%), Positives = 74/134 (55%), Gaps = 9/134 (6%)

Query: 23  AADIVQESYARVLAIERSSVPIGDPRALLYQTARHVMVDQHRRNLLRE--HDDLAALSES 80
           AAD+ Q+++ R+L   + S P+ +PRA L   AR +M+DQ RR  L     + LA L E+
Sbjct: 37  AADLAQDTFVRLLRARQMS-PLKEPRAYLSSIARGLMIDQFRRRALERAYQEGLAHLPEA 95

Query: 81  EQPVLPAHLQPDAILASAQAVQAYVATIEALPPRCREAFVLHVFDGLSHAEIAARMGASV 140
           E P        +  L    +++     ++ L PR R+AF+L   DGLS  ++A R+G S 
Sbjct: 96  EVP------SEEDKLVILDSLERLDRALQQLKPRVRQAFLLAQLDGLSIVQVAQRLGVSR 149

Query: 141 SMIEKHVARGRLAC 154
           + +E+ +A+   AC
Sbjct: 150 ATVERDLAKALGAC 163