Pairwise Alignments

Query, 183 a.a., RNA polymerase ECF-type sigma factor from Variovorax sp. SCN45

Subject, 172 a.a., RNA polymerase sigma-70 factor, ECF subfamily from Pseudomonas putida KT2440

 Score = 74.3 bits (181), Expect = 1e-18
 Identities = 52/160 (32%), Positives = 83/160 (51%), Gaps = 13/160 (8%)

Query: 1   LVTRYYRE----LLNFCARALRNRDAAADIVQESYARVLAIERSSVPIGDPRALLYQTAR 56
           LV   YR+    LL +  R++  R  A D+ Q+++ R+L  E+   P  +PRA L   A+
Sbjct: 11  LVGALYRDHRGWLLAWLQRSMACRQRAEDLSQDTFVRLLGREQLDTP-REPRAFLAAVAK 69

Query: 57  HVMVDQHRRNLLREH--DDLAALSESEQPVLPAHLQPDAILASAQAVQAYVATIEALPPR 114
            +M D  RR  L +    +LA + E+EQP       P+      + ++A    +  L  +
Sbjct: 70  GLMFDHFRRAALEQAYLAELALIPEAEQP------SPEMQHLILEDLKAIDRLLGKLSSK 123

Query: 115 CREAFVLHVFDGLSHAEIAARMGASVSMIEKHVARGRLAC 154
            R AF+    DG+ HAEIA R+G SVS + +++A+G   C
Sbjct: 124 ARAAFLHSRLDGMGHAEIAERLGVSVSRVRQYIAQGMRQC 163