Pairwise Alignments

Query, 211 a.a., RNA polymerase ECF-type sigma factor from Variovorax sp. SCN45

Subject, 191 a.a., RNA polymerase sigma-70 factor, ECF subfamily from Pseudomonas putida KT2440

 Score = 58.9 bits (141), Expect = 6e-14
 Identities = 41/162 (25%), Positives = 74/162 (45%), Gaps = 1/162 (0%)

Query: 37  ANYRRLHQRLLHQLRCPDLASECLHDAWLRLGETSVAAVQNPEAYVYRVACNVAMDRMRS 96
           A   R+   +  ++ C   AS+ + + +LR        V+  + Y+ R A N+A+D +RS
Sbjct: 27  AQRARMEALVSRRVGCRATASDLVQELFLRFWRRPEVKVEALDTYLLRCAGNLAIDHLRS 86

Query: 97  NRPWHCVEDADSELAQHADPAPGPDRIATARSELAAVERAMARLPGRHRAVMVALRIDEM 156
                 V +A   +++ A  A  P++      +L  +E  +  LP R R + +  RI   
Sbjct: 87  ESSRERVAEAAVPVSE-ASLAQAPEQAVEVDHDLQRIEATLRALPERTRQIFLLNRIHGC 145

Query: 157 TRDEVAARYRLSLRRVDTALRQALDYCAEQSSRQAAGTFRPG 198
              E+A   +LS   V+  + +AL+ C    +  A+   RPG
Sbjct: 146 KYSEIAKAMQLSQSAVEKHMMRALEACKASVAEPASTPRRPG 187