Pairwise Alignments

Query, 211 a.a., RNA polymerase ECF-type sigma factor from Variovorax sp. SCN45

Subject, 161 a.a., ECF subfamily RNA polymerase sigma-24 factor from Pseudomonas putida KT2440

 Score = 60.8 bits (146), Expect = 1e-14
 Identities = 43/148 (29%), Positives = 72/148 (48%), Gaps = 2/148 (1%)

Query: 38  NYRRLHQRLLHQLRCPDLASECLHDAWLRLGETSVAAVQNPEAYVYRVACNVAMDRMRSN 97
           +Y  L      +LR    A +  HDA++R+ ET    V+ P AY+++ A N+A+D  R  
Sbjct: 10  HYHELIGTWTRKLRSRQQAEDLTHDAFVRVLETPREQVEQPRAYLHQAARNIAVDGFRRE 69

Query: 98  RPWHCVEDADSELAQHADPAPGPDRIATARSELAAVERAMARLPGRHRAVMVALRIDEMT 157
                +E    E  + A  +  P+    A     +VERA+A LP   R V +  +++ +T
Sbjct: 70  DRRQALEREAFE--EGATGSGDPEAYVHALELADSVERALAELPLNCRQVFIWQKLEGLT 127

Query: 158 RDEVAARYRLSLRRVDTALRQALDYCAE 185
           + E+A R  LS   V+  + + L +  E
Sbjct: 128 QAEIAERMGLSKNMVEKYMIRTLRHLRE 155