Pairwise Alignments

Query, 171 a.a., Extracytoplasmic function (ECF) sigma factor VreI from Variovorax sp. SCN45

Subject, 180 a.a., RNA polymerase sigma factor from Pseudomonas simiae WCS417

 Score = 62.0 bits (149), Expect = 5e-15
 Identities = 45/148 (30%), Positives = 70/148 (47%), Gaps = 3/148 (2%)

Query: 6   QLVLLNYLGRHYASLKQRLTRKLGNADDAGDALHDTWLRLKGNEDHGTVQNPGAYLSRMA 65
           Q  L      H+  L   L +KLG +  A D  HD ++R+    +   ++ P A+L+  A
Sbjct: 14  QQTLTAMYSEHHGWLHGWLRKKLGCSQHAADLAHDAFIRVLMLAEPQQIKEPRAFLATTA 73

Query: 66  VNIAVDVQRRQSRLLSGDEVEELLEEIEDPA-PGPARTAEIRSDLDAVLTLLDRMPERRR 124
             + +D  RR  R +    +E L+ + ED   P PA        L+ +  +L  +P + R
Sbjct: 74  GRLLIDGARR--RRIEKAYMEALVIQCEDAGMPDPAAIHVALQALERIAEMLAGLPAKAR 131

Query: 125 AVALLVHAEGLTQNEAAQRLGVSLRTVE 152
              LL   +GLT +E A RL VS  TV+
Sbjct: 132 EAFLLSRLDGLTYSEIATRLDVSASTVK 159